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藏红花雀(雀形目,鸟类)的核型进化与重复DNA的基因组组织

Karyotype Evolution and Genomic Organization of Repetitive DNAs in the Saffron Finch, (Passeriformes, Aves).

作者信息

Kretschmer Rafael, Rodrigues Benilson Silva, Barcellos Suziane Alves, Costa Alice Lemos, Cioffi Marcelo de Bello, Garnero Analía Del Valle, Gunski Ricardo José, de Oliveira Edivaldo Herculano Corrêa, Griffin Darren K

机构信息

School of Biosciences, University of Kent, Canterbury CT2 7NJ, UK.

Instituto Federal do Pará, Abaetetuba 8440-000, Brazil.

出版信息

Animals (Basel). 2021 May 19;11(5):1456. doi: 10.3390/ani11051456.

DOI:10.3390/ani11051456
PMID:34069485
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8160697/
Abstract

The Saffron finch (), a semi-domestic species, is tolerant of human proximity and nesting in roof spaces. Considering the importance of cytogenomic approaches in revealing different aspects of genomic organization and evolution, we provide detailed cytogenetic data for . , including the standard Giemsa karyotype, C- and G-banding, repetitive DNA mapping, and bacterial artificial chromosome (BAC) FISH. We also compared our results with the sister groups, Passeriformes and Psittaciformes, bringing new insights into the chromosome and genome evolution of birds. The results revealed contrasting rates of intrachromosomal changes, highlighting the role of SSR (simple short repetition probes) accumulation in the karyotype reorganization. The SSRs showed scattered hybridization, but brighter signals were observed in the microchromosomes and the short arms of Z chromosome in . . BACs probes showed conservation of ancestral syntenies of macrochromosomes (except GGA1), as well as the tested microchromosomes. The comparison of our results with previous studies indicates that the great biological diversity observed in Passeriformes was not likely accompanied by interchromosomal changes. In addition, although repetitive sequences often act as hotspots of genome rearrangements, Passeriformes species showed a higher number of signals when compared with the sister group Psittaciformes, indicating that these sequences were not involved in the extensive karyotype reorganization seen in the latter.

摘要

番红花雀()是一种半驯化物种,能容忍人类靠近并在屋顶空间筑巢。考虑到细胞基因组学方法在揭示基因组组织和进化不同方面的重要性,我们提供了关于[物种名称未给出]的详细细胞遗传学数据,包括标准吉姆萨核型、C带和G带、重复DNA图谱绘制以及细菌人工染色体(BAC)荧光原位杂交。我们还将我们的结果与姐妹类群雀形目和鹦形目进行了比较,为鸟类的染色体和基因组进化带来了新的见解。结果揭示了染色体内部变化的不同速率,突出了简单短重复序列(SSR)积累在核型重组中的作用。在[物种名称未给出]中,SSR显示出分散的杂交信号,但在微染色体和Z染色体短臂上观察到更亮的信号。BAC探针显示出大染色体(除GGA1外)以及所测试的微染色体的祖先同线性的保守性。我们的结果与先前研究的比较表明,雀形目中观察到的巨大生物多样性不太可能伴随着染色体间的变化。此外,尽管重复序列通常是基因组重排的热点,但与姐妹类群鹦形目相比,雀形目物种显示出更多的信号,这表明这些序列并未参与后者中广泛的核型重组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39a3/8160697/daccb3eeae45/animals-11-01456-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39a3/8160697/64efc0df7e0b/animals-11-01456-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39a3/8160697/8b1b65b7fc96/animals-11-01456-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39a3/8160697/daccb3eeae45/animals-11-01456-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39a3/8160697/64efc0df7e0b/animals-11-01456-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39a3/8160697/38e672150e2f/animals-11-01456-g002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39a3/8160697/daccb3eeae45/animals-11-01456-g007.jpg

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