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通过氧化蛋白质组学确定细胞膜上凝集素的糖蛋白特异性

Determination of the glycoprotein specificity of lectins on cell membranes through oxidative proteomics.

作者信息

Xie Yixuan, Sheng Ying, Li Qiongyu, Ju Seunghye, Reyes Joe, Lebrilla Carlito B

机构信息

Department of Chemistry, University of California Davis Davis California USA

Department of Chemistry, Biochemistry, Molecular, Cellular and Developmental Biology Graduate Group, University of California Davis Davis California USA.

出版信息

Chem Sci. 2020 Aug 17;11(35):9501-9512. doi: 10.1039/d0sc04199h.

Abstract

The cell membrane is composed of a network of glycoconjugates including glycoproteins and glycolipids that presents a dense matrix of carbohydrates playing critical roles in many biological processes. Lectin-based technology has been widely used to characterize glycoconjugates in tissues and cell lines. However, their specificity toward their putative glycan ligand and sensitivity have been technologically difficult to study. Additionally, because they recognize primarily glycans, the underlying glycoprotein targets are generally not known. In this study, we employed lectin proximity oxidative labeling (Lectin PROXL) to identify cell surface glycoproteins that contain glycans that are recognized by lectins. Commonly used lectins were modified with a probe to produce hydroxide radicals in the proximity of the labeled lectins. The underlying polypeptides of the glycoproteins recognized by the lectins are oxidized and identified by the standard proteomic workflow. As a result, approximately 70% of identified glycoproteins were oxidized by all the lectin probes, while only 5% of the total proteins were oxidized. The correlation between the glycosites and oxidation sites demonstrated the effectiveness of the lectin probes. The specificity and sensitivity of each lectin were determined using site-specific glycan information obtained through glycomic and glycoproteomic analyses. Notably, the sialic acid-binding lectins and the fucose-binding lectins had higher specificity and sensitivity compared to other lectins, while those that were specific to high mannose glycans have poor sensitivity and specificity. This method offers an unprecedented view of the interactions of lectins with specific glycoproteins as well as protein networks that are mediated by specific glycan types on cell membranes.

摘要

细胞膜由包括糖蛋白和糖脂在内的糖缀合物网络组成,呈现出在许多生物过程中发挥关键作用的密集碳水化合物基质。基于凝集素的技术已被广泛用于表征组织和细胞系中的糖缀合物。然而,它们对假定的聚糖配体的特异性和敏感性在技术上一直难以研究。此外,由于它们主要识别聚糖,潜在的糖蛋白靶点通常并不清楚。在本研究中,我们采用凝集素邻近氧化标记(Lectin PROXL)来鉴定含有被凝集素识别的聚糖的细胞表面糖蛋白。常用的凝集素用一种探针进行修饰,以便在标记的凝集素附近产生氢氧根自由基。被凝集素识别的糖蛋白的潜在多肽被氧化,并通过标准的蛋白质组学工作流程进行鉴定。结果,大约70%的已鉴定糖蛋白被所有凝集素探针氧化,而只有5%的总蛋白被氧化。糖基化位点与氧化位点之间的相关性证明了凝集素探针的有效性。利用通过糖组学和糖蛋白质组学分析获得的位点特异性聚糖信息,确定了每种凝集素的特异性和敏感性。值得注意的是,与其他凝集素相比,唾液酸结合凝集素和岩藻糖结合凝集素具有更高的特异性和敏感性,而那些对高甘露糖聚糖特异的凝集素则具有较差的敏感性和特异性。该方法为凝集素与特定糖蛋白以及由细胞膜上特定聚糖类型介导的蛋白质网络之间的相互作用提供了前所未有的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6544/8162070/73d1ac4ed040/d0sc04199h-f1.jpg

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