• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

壳斗科(山毛榉科)某植物的完整叶绿体基因组序列

The complete chloroplast genome sequence of (Fagaceae).

作者信息

Jiang Xiao-Long, Mou Hong-Lin, Luo Chang-Sha, Xu Gang-Biao

机构信息

The Laboratory of Forestry Genetics, Central South University of Forestry and Technology, Changsha, China.

出版信息

Mitochondrial DNA B Resour. 2021 May 31;6(7):1789-1790. doi: 10.1080/23802359.2021.1931505.

DOI:10.1080/23802359.2021.1931505
PMID:34104776
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8168737/
Abstract

F.P.Metcalf, a rare oak with endemic to southern China, belongs to the compound trichome base (CTB) lineage in the section. The complete chloroplast genome of the species was assembled and annotated in this study. The circular genome was 160,731 bp in size, presenting a typical quadripartite structure including one large single-copy region (LSC, 90,140 bp), one small single-copy region (SSC, 18,911 bp), and two copies of inverted repeat regions (IRs, 25,840 bp). It encoded a total of 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The maximum-likelihood (ML) phylogenetic tree reconstructed by IQ-TREE indicated that was more closely related to and .

摘要

华南石栎是中国南方特有的一种珍稀橡树,属于该组中的复合毛状体基部(CTB)谱系。本研究对该物种的完整叶绿体基因组进行了组装和注释。环状基因组大小为160,731 bp,呈现典型的四分体结构,包括一个大单拷贝区域(LSC,90,140 bp)、一个小单拷贝区域(SSC,18,911 bp)和两个反向重复区域拷贝(IRs,25,840 bp)。它总共编码113个独特基因,包括79个蛋白质编码基因、30个tRNA基因和4个rRNA基因。由IQ-TREE重建的最大似然(ML)系统发育树表明,它与[具体物种1]和[具体物种2]关系更密切。 (注:原文中部分物种名缺失,翻译时保留原文格式)

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2f8/8168737/5cc5677c80b1/TMDN_A_1931505_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2f8/8168737/5cc5677c80b1/TMDN_A_1931505_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2f8/8168737/5cc5677c80b1/TMDN_A_1931505_F0001_B.jpg

相似文献

1
The complete chloroplast genome sequence of (Fagaceae).壳斗科(山毛榉科)某植物的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2021 May 31;6(7):1789-1790. doi: 10.1080/23802359.2021.1931505.
2
The complete chloroplast genome sequence of (Fagaceae).(壳斗科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2019 Sep 20;4(2):3139-3140. doi: 10.1080/23802359.2019.1667276.
3
The complete chloroplast genome sequence of and comparative analysis with related species.[物种名称]的完整叶绿体基因组序列及与相关物种的比较分析。 (你提供的原文中“of”后面缺少具体物种名称,这里补充了[物种名称]以便完整理解,你可根据实际情况修改。)
Mitochondrial DNA B Resour. 2021 Aug 9;6(9):2607-2609. doi: 10.1080/23802359.2021.1961630. eCollection 2021.
4
The complete chloroplast genome sequence of Skan (Fagaceae).石栎(壳斗科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2021 Sep 17;6(10):2977-2978. doi: 10.1080/23802359.2021.1975515. eCollection 2021.
5
Characterization of the complete chloroplast genome of (Fagaceae).壳斗科(山毛榉科)完整叶绿体基因组的特征分析
Mitochondrial DNA B Resour. 2021 Nov 17;6(12):3320-3321. doi: 10.1080/23802359.2021.1994893. eCollection 2021.
6
The complete chloroplast genome sequence of Blume (Fagaceae).壳斗科锥属的叶绿体全基因组序列
Mitochondrial DNA B Resour. 2022 Jan 10;7(1):182-184. doi: 10.1080/23802359.2021.2017366. eCollection 2022.
7
The complete chloroplast genome sequence of (Fagaceae), and comparative analysis with related species.壳斗科(Fagaceae)植物的叶绿体全基因组序列及与相关物种的比较分析。
Mitochondrial DNA B Resour. 2023 Apr 24;8(4):527-531. doi: 10.1080/23802359.2023.2204167. eCollection 2023.
8
The complete chloroplast genome of (Fagaceae) from China.来自中国的壳斗科(山毛榉科)植物的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2019 Sep 6;4(2):2857-2858. doi: 10.1080/23802359.2019.1660921.
9
The complete plastid genome sequence of (Fagaceae), an evergreen broad-leaved oak endemic to East Asia.东亚特有的常绿阔叶栎树——(壳斗科)的完整质体基因组序列。
Mitochondrial DNA B Resour. 2021 Feb 3;6(2):320-322. doi: 10.1080/23802359.2020.1866449.
10
The complete chloroplast genome sequence of (Fagaceae).壳斗科(山毛榉科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2019 Jul 12;4(2):2493-2494. doi: 10.1080/23802359.2019.1637299.

引用本文的文献

1
Comparative and phylogenetic analysis of chloroplast genomes from ten species in section .组中十个物种叶绿体基因组的比较与系统发育分析。
Front Plant Sci. 2024 Aug 19;15:1430191. doi: 10.3389/fpls.2024.1430191. eCollection 2024.
2
Comparative and phylogenetic analysis of chloroplast genomes from four species in Quercus section Cyclobalanopsis.四种麻栎组栎属植物叶绿体基因组的比较和系统发育分析
BMC Genom Data. 2024 Jun 10;25(1):57. doi: 10.1186/s12863-024-01232-y.
3
Comprehensive Analysis of Codon Usage in Chloroplast Genome and Focus on Gene.

本文引用的文献

1
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
2
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
3
MAFFT-DASH: integrated protein sequence and structural alignment.MAFFT-DASH:集成蛋白质序列和结构比对。
叶绿体基因组密码子使用的综合分析及基因重点分析
Genes (Basel). 2022 Nov 18;13(11):2156. doi: 10.3390/genes13112156.
Nucleic Acids Res. 2019 Jul 2;47(W1):W5-W10. doi: 10.1093/nar/gkz342.
4
Phylogeny and biogeography of East Asian evergreen oaks (Quercus section Cyclobalanopsis; Fagaceae): Insights into the Cenozoic history of evergreen broad-leaved forests in subtropical Asia.东亚常绿橡树(栎属 Cyclobalanopsis 组;壳斗科)的系统发育和生物地理学:对亚热带亚洲常绿阔叶林新生代历史的认识。
Mol Phylogenet Evol. 2018 Feb;119:170-181. doi: 10.1016/j.ympev.2017.11.003. Epub 2017 Nov 22.
5
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices.用于从超级矩阵进行系统发育基因组推断的分层感知数据结构
Syst Biol. 2016 Nov;65(6):997-1008. doi: 10.1093/sysbio/syw037. Epub 2016 Apr 26.