Department of Burn and Plastic Surgery, Guiping People's Hospital, Ren-Min West Road, Guiping, Guangxi 537200, China.
Department of Plastic and Aesthetic Surgery, The Fifth Affiliated Hospital of Guangxi Medical University & The First People's Hospital of Nanning, NO.89, Qi-Xing Road, Nanning, Guangxi 530022, China.
Biomed Res Int. 2021 May 24;2021:8836243. doi: 10.1155/2021/8836243. eCollection 2021.
Severe burns are acute wounds caused by local heat exposure, resulting in life-threatening systemic effects and poor survival. However, the specific molecular mechanisms remain unclear. First, we downloaded gene expression data related to severe burns from the GEO database (GSE19743, GSE37069, and GSE77791). Then, a gene expression analysis was performed to identify differentially expressed genes (DEGs) and construct protein-protein interaction (PPI) network. The molecular mechanism was identified by enrichment analysis and Gene Set Enrichment Analysis. In addition, STEM software was used to screen for genes persistently expressed during response to severe burns, and receiver operating characteristic (ROC) curve was used to identify key DEGs. A total of 2631 upregulated and 3451 downregulated DEGs were identified. PPI network analysis clustered these DEGs into 13 modules. Importantly, module genes mostly related with immune responses and metabolism. In addition, we identified genes persistently altered during the response to severe burns corresponding to survival and death status. Among the genes with high area under the ROC curve in the PPI network gene, CCL5 and LCK were identified as key DEGs, which may affect the prognosis of burn patients. Gene set variation analysis showed that the immune response was inhibited and several types of immune cells were decreased, while the metabolic response was enhanced. The results showed that persistent gene expression changes occur in response to severe burns, which may underlie chronic alterations in physiological pathways. Identifying the key altered genes may reveal potential therapeutic targets for mitigating the effects of severe burns.
严重烧伤是由局部热暴露引起的急性创伤,可导致危及生命的全身效应和较差的存活率。然而,其具体的分子机制尚不清楚。首先,我们从 GEO 数据库(GSE19743、GSE37069 和 GSE77791)下载了与严重烧伤相关的基因表达数据。然后,进行基因表达分析以识别差异表达基因(DEGs)并构建蛋白质-蛋白质相互作用(PPI)网络。通过富集分析和基因集富集分析来确定分子机制。此外,使用 STEM 软件筛选对严重烧伤反应中持续表达的基因,并使用接收者操作特征(ROC)曲线来识别关键 DEGs。共鉴定出 2631 个上调和 3451 个下调的 DEGs。PPI 网络分析将这些 DEGs 聚类为 13 个模块。重要的是,模块基因主要与免疫反应和代谢有关。此外,我们鉴定了与严重烧伤反应相关的生存和死亡状态持续改变的基因。在 PPI 网络基因中,ROC 曲线下面积较高的基因中,CCL5 和 LCK 被鉴定为关键 DEGs,它们可能影响烧伤患者的预后。基因集变异分析表明,免疫反应受到抑制,几种类型的免疫细胞减少,而代谢反应增强。结果表明,严重烧伤后会发生持续的基因表达变化,这可能是生理途径慢性改变的基础。确定关键改变的基因可能揭示潜在的治疗靶点,以减轻严重烧伤的影响。