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应用腹泻样本对霍乱弧菌 O1 的快速诊断检测的实验室评估。

Laboratory evaluation of the rapid diagnostic tests for the detection of Vibrio cholerae O1 using diarrheal samples.

机构信息

Division of Bacteriology, ICMR-National Institute of Cholera and Enteric Diseases, Kolkata, India.

Molecular Genetics Laboratory, Infection and Immunology Division, Translational Health Science Institute of Technology, Faridadad, India.

出版信息

PLoS Negl Trop Dis. 2021 Jun 15;15(6):e0009521. doi: 10.1371/journal.pntd.0009521. eCollection 2021 Jun.

Abstract

BACKGROUND

Cholera, an acute diarrheal disease is a major public health problem in many developing countries. Several rapid diagnostic tests (RDT) are available for the detection of cholera, but their efficacies are not compared in an endemic setting. In this study, we have compared the specificity and sensitivity of three RDT kits for the detection of Vibrio cholerae O1 and compared their efficiency with culture and polymerase chain reaction (PCR) methods.

METHODS

Five hundred six diarrheal stool samples collected from patients from two different hospitals in Kolkata, India were tested using SD Bioline Cholera, SMART-II Cholera O1 and Crystal-VC RDT kits. All the stool samples were screened for the presence of V. cholerae by direct and enrichment culture methods. Stool DNA-based PCR assay was made to target the cholera toxin (ctxAB) and O1 somatic antigen (rfb) encoding genes. Statistical evaluation of the RDTs has been made using STATA software with stool culture and PCR results as the gold standards. The Bayesian latent class model (LCM) was used to evaluate the diagnostic tests in the absence of the gold standard.

RESULTS

Involving culture technique as gold standard, the sensitivity and specificity of the cholera RDT kits in the direct testing of stools was highest with SAMRT-II (86.1%) and SD-Cholera (94.4%), respectively. The DNA based PCR assays gave very high sensitivity (98.4%) but the specificity was comparatively low (75.3%). After enrichment, the high sensitivity and specificity was detected with SAMRT-II (78.8%) and SD-Cholera (99.1%), respectively. Considering PCR as the gold standard, the sensitivity and specificity of the RDTs remained between 52.3-58.2% and 92.3-96.8%, respectively. In the LCM, the sensitivity of direct and enrichment testing was high in SAMRT-II (88% and 92%, respectively), but the specificity was high in SD cholera for both the methods (97% and 100%, respectively). The sensitivity/specificity of RDTs and direct culture have also been analyzed considering the age, gender and diarrheal disease severity of the patients.

CONCLUSION

Overall, the performance of the RDT kits remained almost similar in terms of specificity and sensitivity. Performance of PCR was superior to the antibody-based RDTs. The RTDs are very useful in identifying cholera cases during outbreak/epidemic situations and for making them as a point-of-care (POC) testing tool needs more improvement.

摘要

背景

霍乱是一种急性腹泻病,在许多发展中国家仍是一个主要的公共卫生问题。目前已有多种快速诊断检测试剂(RDT)可用于检测霍乱,但在流行地区尚未对其效能进行比较。在本研究中,我们比较了三种用于检测霍乱弧菌 O1 的 RDT 试剂盒的特异性和敏感性,并比较了它们与培养和聚合酶链反应(PCR)方法的效率。

方法

从印度加尔各答的两家不同医院的患者中收集了 506 份腹泻粪便样本,使用 SD Bioline 霍乱、SMART-II 霍乱 O1 和 Crystal-VC RDT 试剂盒进行检测。所有粪便样本均通过直接和富集培养方法筛查霍乱弧菌的存在。使用针对霍乱毒素(ctxAB)和 O1 体细胞抗原(rfb)编码基因的粪便 DNA 基于 PCR 检测方法进行检测。使用 STATA 软件对 RDT 进行统计评估,以培养和 PCR 结果作为金标准。在没有金标准的情况下,使用贝叶斯潜在类别模型(LCM)来评估诊断检测。

结果

以培养技术为金标准,直接检测粪便时,SMART-II(86.1%)和 SD-Cholera(94.4%)的 RDT 试剂盒的灵敏度和特异性最高。DNA 基于 PCR 检测方法的灵敏度非常高(98.4%),但特异性相对较低(75.3%)。富集后,SMART-II(78.8%)和 SD-Cholera(99.1%)的高灵敏度和特异性分别得到检测。以 PCR 为金标准,RDT 的灵敏度和特异性分别在 52.3-58.2%和 92.3-96.8%之间。在 LCM 中,SMART-II 直接和富集检测的灵敏度较高(分别为 88%和 92%),但 SD cholera 的特异性较高(分别为 97%和 100%)。还考虑了患者的年龄、性别和腹泻病严重程度,分析了 RDT 和直接培养的灵敏度/特异性。

结论

总体而言,RDT 试剂盒在特异性和敏感性方面的性能几乎相似。PCR 的性能优于基于抗体的 RDT。RTD 在暴发/流行期间非常有助于识别霍乱病例,作为一种即时护理(POC)检测工具,还需要进一步改进。

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