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基于对接的虚拟筛选鉴定新型 SPT 抑制剂 WXP-003 及其抗真菌作用研究。

Identification of a novel SPT inhibitor WXP-003 by docking-based virtual screening and investigation of its anti-fungi effect.

机构信息

The Affiliated Wuxi No. 2 People's Hospital of Nanjing Medical University, Wuxi, China.

School of Food Science and Technology, Jiangnan University, Wuxi, China.

出版信息

J Enzyme Inhib Med Chem. 2021 Dec;36(1):1007-1015. doi: 10.1080/14756366.2021.1915301.

DOI:10.1080/14756366.2021.1915301
PMID:34148472
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8218698/
Abstract

Serine palmitoyltransferase (SPT) plays the key role on catalysing the formation of 3-ketodihydrosphingosine, which is the first step of the biosynthesis of sphingolipids. SPT is linked to many diseases including fungal infection, making it a potential therapeutic target. Thus, a logical docking-based virtual screening method was used to screen selective SPT inhibitor against fungi, not human. We used myriocin-similarity database to identify compounds with good binding with fungal SPT and poor binding with homology human SPT model. Preliminary bio-assay led to the discovery of a promising inhibitor , which displayed good inhibitory activity against diversity fungi strains with MIC ranging from 0.78 to 12.5 μg/mL. could significantly reduce sphingolipids content in fungi and no effect on mouse fibroblast cell line L929. Molecular dynamics simulation depicted that SPT/ complex formed the favoured interactions. Taken together, discovery of provided valuable guide for the development of novel anti-fungal agents.

摘要

丝氨酸棕榈酰转移酶(SPT)在催化 3-酮二氢鞘氨醇形成中发挥关键作用,3-酮二氢鞘氨醇是鞘脂类生物合成的第一步。SPT 与包括真菌感染在内的许多疾病有关,使其成为一个有潜在治疗价值的靶点。因此,我们使用基于合理对接的虚拟筛选方法,筛选针对真菌而非人类的选择性 SPT 抑制剂。我们使用类霉菌素相似性数据库来鉴定与真菌 SPT 具有良好结合性且与同源人 SPT 模型结合性差的化合物。初步的生物测定导致发现了一种有前途的抑制剂,该抑制剂对多种真菌菌株表现出良好的抑制活性,最低抑菌浓度(MIC)范围为 0.78 至 12.5μg/mL。它能显著降低真菌中的鞘脂含量,而对小鼠成纤维细胞系 L929 没有影响。分子动力学模拟描述了 SPT/抑制剂复合物形成了有利的相互作用。总之,抑制剂的发现为新型抗真菌药物的开发提供了有价值的指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/cd8212e8e8dd/IENZ_A_1915301_F0007_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/ad59a2805b2b/IENZ_A_1915301_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/1632f08b889e/IENZ_A_1915301_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/21f291d78b90/IENZ_A_1915301_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/8acbd4a37747/IENZ_A_1915301_F0004_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/c4337232f426/IENZ_A_1915301_F0005_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/4998d7889e8a/IENZ_A_1915301_F0006_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/5f3b8094e898/IENZ_A_1915301_SCH0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/cd8212e8e8dd/IENZ_A_1915301_F0007_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/ad59a2805b2b/IENZ_A_1915301_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/1632f08b889e/IENZ_A_1915301_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/21f291d78b90/IENZ_A_1915301_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/8acbd4a37747/IENZ_A_1915301_F0004_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/c4337232f426/IENZ_A_1915301_F0005_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/4998d7889e8a/IENZ_A_1915301_F0006_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/5f3b8094e898/IENZ_A_1915301_SCH0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6f1/8218698/cd8212e8e8dd/IENZ_A_1915301_F0007_C.jpg

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