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TE中心:一个以社区为导向的空间,用于共享和连接转座元件注释的工具、数据、资源和方法。

TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.

作者信息

Elliott Tyler A, Heitkam Tony, Hubley Robert, Quesneville Hadi, Suh Alexander, Wheeler Travis J

机构信息

Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.

Faculty of Biology, Technische Universität Dresden, 01069, Dresden, Germany.

出版信息

Mob DNA. 2021 Jun 21;12(1):16. doi: 10.1186/s13100-021-00244-0.

Abstract

Transposable elements (TEs) play powerful and varied evolutionary and functional roles, and are widespread in most eukaryotic genomes. Research into their unique biology has driven the creation of a large collection of databases, software, classification systems, and annotation guidelines. The diversity of available TE-related methods and resources raises compatibility concerns and can be overwhelming to researchers and communicators seeking straightforward guidance or materials. To address these challenges, we have initiated a new resource, TE Hub, that provides a space where members of the TE community can collaborate to document and create resources and methods. The space consists of (1) a website organized with an open wiki framework,  https://tehub.org , (2) a conversation framework via a Twitter account and a Slack channel, and (3) bi-monthly Hub Update video chats on the platform's development. In addition to serving as a centralized repository and communication platform, TE Hub lays the foundation for improved integration, standardization, and effectiveness of diverse tools and protocols. We invite the TE community, both novices and experts in TE identification and analysis, to join us in expanding our community-oriented resource.

摘要

转座元件(TEs)在进化和功能方面发挥着强大且多样的作用,广泛存在于大多数真核生物基因组中。对其独特生物学特性的研究催生了大量的数据库、软件、分类系统和注释指南。可用的与TE相关的方法和资源的多样性引发了兼容性问题,对于寻求直接指导或材料的研究人员和传播者来说可能会应接不暇。为应对这些挑战,我们启动了一个新资源——TE中心,它为TE社区成员提供了一个协作记录和创建资源与方法的空间。该空间包括:(1)一个采用开放维基框架组织的网站,https://tehub.org ;(2)通过推特账户和Slack频道搭建的交流框架;(3)关于平台发展的双月Hub更新视频聊天。除了作为一个集中的存储库和交流平台外,TE中心还为改进各种工具和协议的整合、标准化及有效性奠定了基础。我们邀请TE社区,包括TE识别与分析方面的新手和专家,加入我们来扩展这个面向社区的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7e3/8215825/a1cb86787145/13100_2021_244_Fig1_HTML.jpg

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