人呼吸道合胞病毒 A 和 B 的遗传多样性和分子进化。
Genetic diversity and molecular evolution of human respiratory syncytial virus A and B.
机构信息
College of Life Sciences and Bioengineering, Beijing Jiaotong University, Beijing, 100044, China.
出版信息
Sci Rep. 2021 Jun 21;11(1):12941. doi: 10.1038/s41598-021-92435-1.
Human respiratory syncytial viruses (RSVs) are classified into two major groups (A and B) based on antigenic differences in the G glycoprotein. To investigate circulating characteristics and phylodynamic history of RSV, we analyzed the genetic variability and evolutionary pattern of RSVs from 1977 to 2019 in this study. The results revealed that there was no recombination event of intergroup. Single nucleotide polymorphisms (SNPs) were observed through the genome with the highest occurrence rate in the G gene. Five and six sites in G protein of RSV-A and RSV-B, respectively, were further identified with a strong positive selection. The mean evolutionary rates for RSV-A and -B were estimated to be 1.48 × 10 and 1.92 × 10 nucleotide substitutions/site/year, respectively. The Bayesian skyline plot showed a constant population size of RSV-A and a sharp expansion of population size of RSV-B since 2005, and an obvious decrease 5 years later, then became stable again. The total population size of RSVs showed a similar tendency to that of RSV-B. Time-scaled phylogeny suggested a temporal specificity of the RSV-genotypes. Monitoring nucleotide changes and analyzing evolution pattern for RSVs could give valuable insights for vaccine and therapy strategies against RSV infection.
人呼吸道合胞病毒(RSV)根据 G 糖蛋白的抗原差异分为两个主要组(A 和 B)。为了研究 RSV 的循环特征和系统发育史,本研究分析了 1977 年至 2019 年 RSV 的遗传变异性和进化模式。结果表明,组间没有重组事件。通过基因组观察到单核苷酸多态性(SNP),其中 G 基因的发生率最高。进一步鉴定出 RSV-A 和 RSV-B 的 G 蛋白中分别有 5 个和 6 个位点具有强烈的正选择。估计 RSV-A 和 -B 的平均进化率分别为 1.48×10 和 1.92×10 核苷酸取代/位点/年。贝叶斯天空线图显示 RSV-A 的种群大小保持恒定,RSV-B 的种群大小自 2005 年以来急剧扩张,5 年后明显下降,然后再次稳定。RSVs 的总种群大小与 RSV-B 的趋势相似。时间尺度系统发育表明 RSV 基因型具有时间特异性。监测核苷酸变化和分析 RSV 的进化模式可为 RSV 感染的疫苗和治疗策略提供有价值的见解。