基于网络药理学的大黄素抗肝纤维化作用机制研究。

The mechanism research on the anti-liver fibrosis of emodin based on network pharmacology.

机构信息

Jiangsu Key Laboratory for Pharmacology and Safety Evaluation of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing, China.

Department of Integrated TCM and Western Medicine, Nanjing Hospital Affiliated to the Nanjing University of Chinese Medicine, Nanjing, China.

出版信息

IUBMB Life. 2021 Sep;73(9):1166-1179. doi: 10.1002/iub.2523. Epub 2021 Jul 13.

Abstract

AIMS

This study was designated to illustrate the underlying mechanisms of emodin anti-liver fibrosis via network pharmacology and experiment.

METHODS

The TSMCP and Genecards database were applied to screen the relevant targets of emodin or liver fibrosis. The essential target was selected by using Cytoscape to analyze the topological network of potential targets. Furthermore, we constructed a preliminary molecule docking study to explore the binding site by Surflex-Dock suite SYBYL X 2.0. The DAVID database was selected for gene functional annotations and KEGG enrichment analysis. Moreover, we demonstrated the ameliorating effect of emodin on carbon tetrachloride (CCl )-induced liver injury in mice. We also verified the network predictions in vitro via various techniques.

RESULTS

The collected results showed that 35 targets were related to emodin, and 6,198 targets were associated with liver fibrosis. The Venn analysis revealed that 17 intersection targets were correlated with emodin anti-liver fibrosis. The topological network analysis suggested that the p53 was the remarkable crucial target. Besides, the molecule docking results showed that emodin could directly interact with p53 by binding the active site residues ASN345, GLN331, and TYR347. Finally, KEGG pathway enrichment results indicated that essential genes were mainly enriched in mitogen-activated protein kinase (MAPK) signaling pathways. Moreover, our study confirmed that emodin alleviated CCl -induced liver injury in mice, inducing hepatic stellate cells (HSCs) apoptosis via regulating the p53/ERK/p38 axis.

CONCLUSIONS

This study partially verified the network pharmacological prediction of emodin inducing HSCs cell apoptosis through the p53/ERK/p38 axis.

摘要

目的

本研究旨在通过网络药理学和实验阐明大黄素抗肝纤维化的潜在机制。

方法

应用 TSMCP 和 Genecards 数据库筛选大黄素或肝纤维化的相关靶点。使用 Cytoscape 分析潜在靶点的拓扑网络,选择关键靶点。此外,我们构建了初步的分子对接研究,以通过 Surflex-Dock 套件 SYBYL X 2.0 探索结合位点。选择 DAVID 数据库进行基因功能注释和 KEGG 富集分析。此外,我们在体内验证了大黄素对四氯化碳(CCl )诱导的肝损伤的改善作用。我们还通过各种技术在体外验证了网络预测。

结果

收集的结果表明,35 个与大黄素相关的靶点,6198 个与肝纤维化相关的靶点。Venn 分析显示,与大黄素抗肝纤维化相关的 17 个交集靶点。拓扑网络分析表明,p53 是显著的关键靶点。此外,分子对接结果表明,大黄素可以通过与活性位点残基 ASN345、GLN331 和 TYR347 结合,直接与 p53 相互作用。最后,KEGG 通路富集结果表明,关键基因主要富集于丝裂原激活蛋白激酶(MAPK)信号通路。此外,我们的研究证实,大黄素通过调节 p53/ERK/p38 轴,缓解 CCl 诱导的小鼠肝损伤,诱导肝星状细胞(HSCs)凋亡。

结论

本研究部分验证了大黄素通过 p53/ERK/p38 轴诱导 HSCs 细胞凋亡的网络药理学预测。

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