Choi Minseo, Kim Jong Goo, Muniyappan Srinivasan, Kim Hanui, Kim Tae Wu, Lee Yunbeom, Lee Sang Jin, Kim Seong Ok, Ihee Hyotcherl
Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea
KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST) Daejeon 34141 Republic of Korea.
Chem Sci. 2021 May 10;12(23):8207-8217. doi: 10.1039/d1sc01207j.
A salt bridge, one of the representative structural factors established by non-covalent interactions, plays a crucial role in stabilizing the structure and regulating the protein function, but its role in dynamic processes has been elusive. Here, to scrutinize the structural and functional roles of the salt bridge in the process of performing the protein function, we investigated the effects of salt bridges on the allosteric structural transition of homodimeric hemoglobin (HbI) by applying time-resolved X-ray solution scattering (TRXSS) to the K30D mutant, in which the interfacial salt bridges of the wild type (WT) are abolished. The TRXSS data of K30D are consistent with the kinetic model that requires one monomer intermediate in addition to three structurally distinct dimer intermediates (I, I, and I) observed in WT and other mutants. The kinetic and structural analyses show that K30D has an accelerated biphasic transition from I to I by more than nine times compared to WT and lacks significant structural changes in the transition from R-like I to T-like I observed in WT, unveiling that the loss of the salt bridges interrupts the R-T allosteric transition of HbI. Besides, the correlation between the bimolecular CO recombination rates in K30D, WT, and other mutants reveals that the bimolecular CO recombination is abnormally decelerated in K30D, indicating that the salt bridges also affect the cooperative ligand binding in HbI. These comparisons of the structural dynamics and kinetics of K30D and WT show that the interfacial salt bridges not only assist the physical connection of two subunits but also play a critical role in the global structural signal transduction of one subunit to the other subunit a series of well-organized structural transitions.
盐桥是由非共价相互作用形成的典型结构因素之一,在稳定蛋白质结构和调节蛋白质功能方面发挥着关键作用,但其在动态过程中的作用一直难以捉摸。在这里,为了仔细研究盐桥在蛋白质功能执行过程中的结构和功能作用,我们通过对K30D突变体应用时间分辨X射线溶液散射(TRXSS)来研究盐桥对同二聚体血红蛋白(HbI)变构结构转变的影响,在该突变体中野生型(WT)的界面盐桥被消除。K30D的TRXSS数据与动力学模型一致,该模型除了在WT和其他突变体中观察到的三种结构不同的二聚体中间体(I、I和I)外,还需要一个单体中间体。动力学和结构分析表明,与WT相比,K30D从I到I的双相转变加速了九倍以上,并且在从WT中观察到的类R型I到类T型I的转变过程中缺乏明显的结构变化,这表明盐桥的缺失中断了HbI的R-T变构转变。此外,K30D、WT和其他突变体中双分子CO重组速率之间的相关性表明,K30D中的双分子CO重组异常减速,这表明盐桥也影响HbI中的协同配体结合。K30D和WT的结构动力学和动力学的这些比较表明,界面盐桥不仅有助于两个亚基的物理连接,而且在一个亚基到另一个亚基的全局结构信号转导——一系列组织良好的结构转变中也起着关键作用。