Suppr超能文献

第二定律:信息论与自组装。

The second law: information theory and self-assembly.

机构信息

Division of Applied Mathematics, Brown University, Providence, Rhode Island.

出版信息

Biophys J. 2021 Oct 5;120(19):4252-4263. doi: 10.1016/j.bpj.2021.06.028. Epub 2021 Jun 30.

Abstract

An interplay between algorithmic and mechanistic viewpoints is necessary to quantify the rates of transition between different states in developmental pathways. An ab initio method that uses only information theory and geometry to model the conformational entropy of linkages is discussed. This approach also reveals some ties between biological questions and the foundations of mathematics.

摘要

为了量化发育途径中不同状态之间的转变速率,需要在算法和机械观点之间进行相互作用。本文讨论了一种仅使用信息论和几何来模拟键的构象熵的从头计算方法。该方法还揭示了一些生物学问题与数学基础之间的联系。

相似文献

1
The second law: information theory and self-assembly.
Biophys J. 2021 Oct 5;120(19):4252-4263. doi: 10.1016/j.bpj.2021.06.028. Epub 2021 Jun 30.
2
Methods of information theory and algorithmic complexity for network biology.
Semin Cell Dev Biol. 2016 Mar;51:32-43. doi: 10.1016/j.semcdb.2016.01.011. Epub 2016 Jan 21.
3
Understanding how replication processes can maintain systems away from equilibrium using Algorithmic Information Theory.
Biosystems. 2016 Feb;140:8-22. doi: 10.1016/j.biosystems.2015.11.008. Epub 2015 Dec 23.
6
Equalizing the information amounts of protein and mRNA by information theory.
Biosystems. 2017 Sep;159:1-11. doi: 10.1016/j.biosystems.2017.05.003. Epub 2017 Jun 15.
7
Stochastic Thermodynamic Interpretation of Information Geometry.
Phys Rev Lett. 2018 Jul 20;121(3):030605. doi: 10.1103/PhysRevLett.121.030605.
8
Information theoretical aspects of the aging process of organismic systems.
Arch Gerontol Geriatr. 1986 Jul;5(2):97-105. doi: 10.1016/0167-4943(86)90013-0.
9
A theory of pragmatic information and its application to the quasi-species model of biological evolution.
Biosystems. 2002 Aug-Sep;66(3):105-19. doi: 10.1016/s0303-2647(02)00038-2.
10
Cardiorespiratory Information Dynamics during Mental Arithmetic and Sustained Attention.
PLoS One. 2015 Jun 4;10(6):e0129112. doi: 10.1371/journal.pone.0129112. eCollection 2015.

本文引用的文献

1
Building polyhedra by self-assembly: theory and experiment.
Artif Life. 2014 Fall;20(4):409-39. doi: 10.1162/ARTL_a_00144. Epub 2014 Aug 22.
2
Algorithmic design of self-folding polyhedra.
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):19885-90. doi: 10.1073/pnas.1110857108. Epub 2011 Dec 2.
3
Supramolecular Archimedean cages assembled with 72 hydrogen bonds.
Science. 2011 Jul 22;333(6041):436-40. doi: 10.1126/science.1204369.
4
Crystal structure of the sodium-potassium pump at 2.4 A resolution.
Nature. 2009 May 21;459(7245):446-50. doi: 10.1038/nature07939.
5
Self-assembly of DNA into nanoscale three-dimensional shapes.
Nature. 2009 May 21;459(7245):414-8. doi: 10.1038/nature08016.
6
Icosahedral DNA nanocapsules by modular assembly.
Angew Chem Int Ed Engl. 2009;48(23):4134-7. doi: 10.1002/anie.200806000.
7
Compactness determines the success of cube and octahedron self-assembly.
PLoS One. 2009;4(2):e4451. doi: 10.1371/journal.pone.0004451. Epub 2009 Feb 12.
8
The protein folding problem.
Annu Rev Biophys. 2008;37:289-316. doi: 10.1146/annurev.biophys.37.092707.153558.
9
Surface tension-driven self-folding polyhedra.
Langmuir. 2007 Aug 14;23(17):8747-51. doi: 10.1021/la700913m. Epub 2007 Jul 4.
10
A tiling approach to virus capsid assembly explaining a structural puzzle in virology.
J Theor Biol. 2004 Feb 21;226(4):477-82. doi: 10.1016/j.jtbi.2003.10.006.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验