Département de Physique, Faculté des Sciences, Université de Bangui, Bangui, Central African Republic.
PG and Research Department of Physics, N. M. S. S. V. N College, Madurai, Tamil Nadu, India.
J Biomol Struct Dyn. 2022;40(21):10651-10664. doi: 10.1080/07391102.2021.1947380. Epub 2021 Jul 15.
In this paper, a complete theoretical investigation of hydroxylic indole-3-pyruvic acid (HIPyA) molecule was performed using the DFT quantum chemical, molecular docking and molecular dynamics calculations. The conformational analysis of HIPyA molecule was carried out using density functional theory quantum chemical calculations. The most stable structure of the studied molecule was predicted by means of DFT/B3LYP method with cc-pVTZ basis set. The simulated vibrational frequencies were assigned and proved to be in agreement with the available experimental FT-IR data. The effects of gas phase and solvents on UV-visible spectra of HIPyA molecule were simulated using TD-DFT/B3LYP method with cc-pVTZ basis set. The analysis of the density of states spectrum validates the frontier molecular orbitals results, which reveals the charge transfer interaction in HIPyA molecule. The molecular electrostatic potential surface confirms the electrophilic and nucleophilic reactive sites of the studied molecule. The natural bond orbital analysis evidences the bioactivity of the studied molecule. The obtained first order hyperpolarizability value is 33.596 times greater than urea, which confirms the nonlinear optical activity of HIPyA molecule. The molecular docking analysis reveals that the studied molecule under interest can act as a potent inhibitor against the amyloid β-protein (Aβ) enzyme, which causes the Alzheimer's disease. The molecular dynamics analysis confirms the reliability of the docking results.Communicated by Ramaswamy H. Sarma.
本文采用密度泛函理论量子化学计算、分子对接和分子动力学计算,对羟基吲哚-3-丙酮酸(HIPyA)分子进行了全面的理论研究。通过密度泛函理论量子化学计算对 HIPyA 分子的构象进行了分析。采用 DFT/B3LYP 方法和 cc-pVTZ 基组预测了研究分子的最稳定结构。模拟的振动频率被分配并证明与可用的实验 FT-IR 数据一致。采用 TD-DFT/B3LYP 方法和 cc-pVTZ 基组模拟了 HIPyA 分子在气相和溶剂中的紫外-可见光谱的影响。态密度谱的分析验证了前沿分子轨道结果,揭示了 HIPyA 分子中的电荷转移相互作用。分子静电势能表面证实了研究分子的亲电和亲核反应位点。自然键轨道分析证明了研究分子的生物活性。得到的一阶超极化率值比尿素大 33.596 倍,这证实了 HIPyA 分子的非线性光学活性。分子对接分析表明,所研究的分子可以作为一种潜在的抑制剂,对抗导致阿尔茨海默病的淀粉样β-蛋白(Aβ)酶。分子动力学分析证实了对接结果的可靠性。由 Ramaswamy H. Sarma 传达。