• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

海洋发光甲藻的从头转录组组装数据

De novo transcriptome assembly data of the marine bioluminescent dinoflagellate .

作者信息

Menghini Damian, Aubry Sylvain

机构信息

Department of Plant and Microbial Biology, University of Zürich, Zollikerstrasse 107, CH-8008, Zürich, Switzerland.

出版信息

Data Brief. 2021 Jul 2;37:107254. doi: 10.1016/j.dib.2021.107254. eCollection 2021 Aug.

DOI:10.1016/j.dib.2021.107254
PMID:34277902
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8267542/
Abstract

is a unicellular bioluminescing dinoflagellates. While the mechanisms and genes underlying bioluminescence and luciferase synthesis are understood in many bioluminescing clades, it remains unknown in dinoflagellates. We took advantage of merging long and short reads to provide here a assembly of transcriptome. A total of 975 million filtered paired-end reads were obtained and assembled into 155,716 contigs corresponding to putative transcripts that were functionally annotated. This dataset will be valuable for improving our understanding of protist's biology and is accessible via NCBI BioProject (PRJNA727555).

摘要

是一种单细胞发光甲藻。虽然在许多发光类群中,生物发光和荧光素酶合成的机制及基因已为人所知,但在甲藻中仍不清楚。我们利用长读段和短读段合并的方法,在此提供了一个转录组的组装。共获得9.75亿条经过过滤的双端读段,并组装成155,716个重叠群,对应于经过功能注释的假定转录本。该数据集对于增进我们对原生生物生物学的理解将具有重要价值,可通过NCBI生物项目(PRJNA727555)获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eafd/8267542/6bcf8c3f56c2/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eafd/8267542/6bcf8c3f56c2/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eafd/8267542/6bcf8c3f56c2/gr1.jpg

相似文献

1
De novo transcriptome assembly data of the marine bioluminescent dinoflagellate .海洋发光甲藻的从头转录组组装数据
Data Brief. 2021 Jul 2;37:107254. doi: 10.1016/j.dib.2021.107254. eCollection 2021 Aug.
2
An "omic" approach to Pyrocystis lunula: New insights related with this bioluminescent dinoflagellate.对 Pyrocystis lunula 的“组学”研究方法:与这种生物发光甲藻相关的新见解。
J Proteomics. 2019 Oct 30;209:103502. doi: 10.1016/j.jprot.2019.103502. Epub 2019 Aug 26.
3
New Perspectives Related to the Bioluminescent System in Dinoflagellates: , a Case Study.有关甲藻发光系统的新视角:以 为例。
Int J Mol Sci. 2020 Mar 5;21(5):1784. doi: 10.3390/ijms21051784.
4
Data of de novo transcriptome assembly of the myxozoan parasite .黏液虫寄生虫从头转录组组装数据。
Data Brief. 2021 Feb 4;35:106831. doi: 10.1016/j.dib.2021.106831. eCollection 2021 Apr.
5
Cloning and characterization of an active fragment of luciferase from a luminescent marine alga, Pyrocystis lunula.来自发光海洋藻类新月菱形藻的荧光素酶活性片段的克隆与特性分析。
Photochem Photobiol. 2002 Mar;75(3):311-5. doi: 10.1562/0031-8655(2002)075<0311:cacoaa>2.0.co;2.
6
Free sterol composition of species in the dinoflagellate genus Pyrocystis: a spectrum of sterol diversity.Pyrocystis 属甲藻种的游离甾醇组成:甾醇多样性谱。
J Eukaryot Microbiol. 2011 Nov-Dec;58(6):475-9. doi: 10.1111/j.1550-7408.2011.00573.x. Epub 2011 Sep 7.
7
Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon.来自秘鲁亚马逊地区的三种本地产油微藻转录组的从头组装和功能注释数据集。
Data Brief. 2020 Jun 21;31:105917. doi: 10.1016/j.dib.2020.105917. eCollection 2020 Aug.
8
BIOLUMINESCENCE AND CHLOROPLAST MOVEMENT IN THE DINOFLAGELLATE PYROCYSTIS LUNULA(1).
J Phycol. 1967 Jun;3(2):77-81. doi: 10.1111/j.1529-8817.1967.tb04634.x.
9
Effects of salinity, pH and temperature on the re-establishment of bioluminescence and copper or SDS toxicity in the marine dinoflagellate Pyrocystis lunula using bioluminescence as an endpoint.以生物发光为终点,研究盐度、pH值和温度对海洋甲藻月形单鞭金藻生物发光恢复以及铜或十二烷基硫酸钠毒性的影响。
Environ Pollut. 2003;125(2):267-75. doi: 10.1016/s0269-7491(03)00059-9.
10
Dataset of de novo assembly and functional annotation of the transcriptome during germination and initial growth of seedlings of "camu-camu".“卡姆果”种子萌发和幼苗初期生长过程中转录组的从头组装和功能注释数据集
Data Brief. 2020 Jun 11;31:105834. doi: 10.1016/j.dib.2020.105834. eCollection 2020 Aug.

引用本文的文献

1
Unveiling the functional nature of retrogenes in dinoflagellates.揭示甲藻中反转录基因的功能本质。
Open Biol. 2025 Apr;15(4):240221. doi: 10.1098/rsob.240221. Epub 2025 Apr 23.

本文引用的文献

1
An "omic" approach to Pyrocystis lunula: New insights related with this bioluminescent dinoflagellate.对 Pyrocystis lunula 的“组学”研究方法:与这种生物发光甲藻相关的新见解。
J Proteomics. 2019 Oct 30;209:103502. doi: 10.1016/j.jprot.2019.103502. Epub 2019 Aug 26.
2
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO:利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
3
The Lingulodinium circadian system lacks rhythmic changes in transcript abundance.
微小色裸藻的昼夜节律系统在转录本丰度上缺乏节律性变化。
BMC Biol. 2014 Dec 20;12:107. doi: 10.1186/s12915-014-0107-z.
4
QUAST: quality assessment tool for genome assemblies.QUAST:基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
5
EMBOSS: the European Molecular Biology Open Software Suite.EMBOSS:欧洲分子生物学开放软件套件。
Trends Genet. 2000 Jun;16(6):276-7. doi: 10.1016/s0168-9525(00)02024-2.