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用于基于网络的新冠肺炎联合药物重新定位及作用机制研究的综合资源。

Integrative resource for network-based investigation of COVID-19 combinatorial drug repositioning and mechanism of action.

作者信息

Azad A K M, Fatima Shadma, Capraro Alexander, Waters Shafagh A, Vafaee Fatemeh

机构信息

School of Biotechnology and Biomolecular Sciences, University of New South Wales (UNSW Sydney), Sydney, NSW 2052, Australia.

Department of Medical Oncology, Ingham Institute of Applied Research, Sydney, Australia.

出版信息

Patterns (N Y). 2021 Sep 10;2(9):100325. doi: 10.1016/j.patter.2021.100325. Epub 2021 Jul 14.

DOI:10.1016/j.patter.2021.100325
PMID:34278363
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8277549/
Abstract

An effective monotherapy to target the complex and multifactorial pathology of SARS-CoV-2 infection poses a challenge to drug repositioning, which can be improved by combination therapy. We developed an online network pharmacology-based drug repositioning platform, COVID-CDR (http://vafaeelab.com/COVID19repositioning.html), that enables a visual and quantitative investigation of the interplay between the primary drug targets and the SARS-CoV-2-host interactome in the human protein-protein interaction network. COVID-CDR prioritizes drug combinations with potential to act synergistically through different, yet potentially complementary, pathways. It provides the options for understanding multi-evidence drug-pair similarity scores along with several other relevant information on individual drugs or drug pairs. Overall, COVID-CDR is a first-of-its-kind online platform that provides a systematic approach for pre-clinical investigation of combination therapies for treating COVID-19 at the fingertips of the clinicians and researchers.

摘要

针对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)感染复杂且多因素的病理状况开发一种有效的单一疗法,对药物重新定位构成了挑战,联合疗法可能会改善这一状况。我们开发了一个基于网络药理学的在线药物重新定位平台COVID-CDR(http://vafaeelab.com/COVID19repositioning.html),该平台能够在人类蛋白质-蛋白质相互作用网络中对主要药物靶点与SARS-CoV-2-宿主相互作用组之间的相互作用进行可视化和定量研究。COVID-CDR对有可能通过不同但可能互补的途径发挥协同作用的药物组合进行优先级排序。它提供了理解多证据药物对相似性评分的选项以及关于单个药物或药物对的其他一些相关信息。总体而言,COVID-CDR是首个此类在线平台,为临床医生和研究人员提供了一种系统方法,用于在临床前研究治疗2019冠状病毒病的联合疗法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ce9/8441582/130633b0bcca/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ce9/8441582/05d429383e00/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ce9/8441582/3fd28fc71c67/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ce9/8441582/130633b0bcca/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ce9/8441582/05d429383e00/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ce9/8441582/3fd28fc71c67/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ce9/8441582/130633b0bcca/gr3.jpg

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本文引用的文献

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How COVID-19 has fundamentally changed clinical research in global health.新冠疫情如何从根本上改变了全球健康领域的临床研究。
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BMC Biotechnol. 2021 Mar 12;21(1):22. doi: 10.1186/s12896-021-00680-z.
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SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19.SAveRUNNER:一种基于网络的药物重定位算法及其在 COVID-19 中的应用。
PLoS Comput Biol. 2021 Feb 5;17(2):e1008686. doi: 10.1371/journal.pcbi.1008686. eCollection 2021 Feb.
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The key role of Warburg effect in SARS-CoV-2 replication and associated inflammatory response.Warburg 效应在 SARS-CoV-2 复制和相关炎症反应中的关键作用。
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