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通过网络驱动的整合遗传分析和药物靶点预测方法揭示高血压治疗的新机会。

Revealing new therapeutic opportunities in hypertension through network-driven integrative genetic analysis and drug target prediction approach.

机构信息

Translational Research Lab, Department of Biotechnology, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India.

Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India.

出版信息

Gene. 2021 Oct 30;801:145856. doi: 10.1016/j.gene.2021.145856. Epub 2021 Jul 19.

Abstract

Epidemiological studies have established that untreated hypertension (HTN) is a major independent risk factor for developing cardiovascular diseases (CVD), stroke, renal failure, and other conditions. Several important studies have been published to prevent and manage HTN; however, antihypertensive agents' optimal choice remains controversial. Therefore, the present study is undertaken to update our knowledge in the primary treatment of HTN, specifically in the setting of other three important diseases. MicroRNAs (miRNAs) are remarkably stable short endogenous conserved non-coding RNAs that bind to the mRNA at its (3' UTR) to regulate its gene expression by causing translational repression or mRNA degradation. Through their coordinated activities on different pathways and networks, individual miRNAs control normal and pathological cellular processes. Therefore, to identify the critical miRNA-mRNA-TF interactions, we performed systematic bioinformatics analysis. We have also employed the molecular modelling and docking approach to identify the therapeutic target that delivers novel empathies into Food and Drug Administration approved and herbal drug response physiology. Gene Expression Omnibus (GEO) was employed to identify the differentially expressed genes (DEGs) and hub genes- KNG1, HLA-DPB1, CXCL8, IL1B, and BCL2. The HTN associated feed-forward loop (FFL) network included miR-9-5p, KNG1 and AR. We employed high throughput screening to get the best interacting compounds, telmisartan and limonin, that provided a significant docking score (-13.3 and -12.0 kcal/mol) and a potential protective effect that may help to combat the impact of HTN. The present study provides novel insight into HTN etiology through the identification of mRNAs and miRNAs and associated pathways.

摘要

流行病学研究已经证实,未经治疗的高血压(HTN)是导致心血管疾病(CVD)、中风、肾衰竭和其他疾病的主要独立危险因素。已经发表了几项重要的研究来预防和管理 HTN;然而,抗高血压药物的最佳选择仍然存在争议。因此,本研究旨在更新我们在 HTN 初级治疗方面的知识,特别是在其他三种重要疾病的背景下。微小 RNA(miRNA)是一种显著稳定的短内源性保守非编码 RNA,通过在其(3'UTR)处与 mRNA 结合来调节基因表达,从而导致翻译抑制或 mRNA 降解。通过对不同途径和网络的协调活动,单个 miRNA 控制正常和病理细胞过程。因此,为了确定关键的 miRNA-mRNA-TF 相互作用,我们进行了系统的生物信息学分析。我们还采用了分子建模和对接方法来确定治疗靶点,为已批准的药物和草药药物反应生理学提供新的见解。基因表达综合数据库(GEO)用于鉴定差异表达基因(DEGs)和关键基因-KNG1、HLA-DPB1、CXCL8、IL1B 和 BCL2。与 HTN 相关的前馈环(FFL)网络包括 miR-9-5p、KNG1 和 AR。我们采用高通量筛选来获得最佳相互作用的化合物,替米沙坦和柠檬素,它们提供了显著的对接评分(-13.3 和-12.0 kcal/mol)和潜在的保护作用,可能有助于对抗 HTN 的影响。本研究通过鉴定 mRNAs 和 miRNAs 及其相关途径,为 HTN 的病因提供了新的见解。

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