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体外和计算机模拟方法靶向分枝杆菌普遍应激蛋白的 - 香树脂醇的潜在功效。

Potential Efficacy of -Amyrin Targeting Mycobacterial Universal Stress Protein by In Vitro and In Silico Approach.

机构信息

Centre for Interdisciplinary Research in Basic Science, Jamia Millia Islamia, Jamia Nagar, New Delhi 110025, Uttar Pradesh, India.

CSIR-Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, Uttar Pradesh, India.

出版信息

Molecules. 2022 Jul 18;27(14):4581. doi: 10.3390/molecules27144581.

Abstract

The emergence of drug resistance and the limited number of approved antitubercular drugs prompted identification and development of new antitubercular compounds to cure (TB). In this work, an attempt was made to identify potential natural compounds that target mycobacterial proteins. Three plant extracts (, and ) were investigated. The ethyl acetate fraction of the aerial part of and the flower ash of were found to be effective against HRv. Furthermore, the GC-MS analysis of the plant fractions confirmed the presence of active compounds in the extracts. The target proteins, i.e., available PDB dataset proteins and proteins classified in virulence, detoxification, and adaptation, were investigated. A total of ten target proteins were shortlisted for further study, identified as follows: , , , , , , , , , and . Molecular docking studies showed that -amyrin interacted with most of these proteins and its highest binding affinity was observed with Rv1636 () protein. The stability of the protein-ligand complex was assessed by molecular dynamic simulation, which confirmed that -amyrin most firmly interacted with protein. is a universal stress protein, which regulates growth in different stress conditions and, thus, targeting makes vulnerable to host-derived stress conditions.

摘要

耐药性的出现和有限数量的批准抗结核药物促使人们寻找和开发新的抗结核化合物来治愈结核病 (TB)。在这项工作中,尝试鉴定针对分枝杆菌蛋白的潜在天然化合物。研究了三种植物提取物( 、 和 )。发现 地上部分的乙酸乙酯部分和 的花灰对 HRv 有效。此外,植物馏分的 GC-MS 分析证实了提取物中存在活性化合物。对 目标蛋白,即可用的 PDB 数据集蛋白和分类为毒力、解毒和适应的蛋白进行了研究。总共筛选了十种目标蛋白进行进一步研究,鉴定如下: 、 、 、 、 、 、 、 、 。分子对接研究表明, - 齐墩果酸与大多数这些蛋白质相互作用,其与 Rv1636()蛋白的结合亲和力最高。通过分子动力学模拟评估了蛋白质-配体复合物的稳定性,该模拟证实 - 齐墩果酸与 蛋白结合最牢固。 是一种普遍的应激蛋白,它调节 在不同应激条件下的生长,因此,针对 使 易受宿主来源的应激条件影响。

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