Melanda Gislaine C S, Silva-Filho Alexandre G S, Lenz Alexandre Rafael, Menolli Nelson, de Lima Alexandro de Andrade, Ferreira Renato Juciano, de Assis Nathalia Mendonça, Cabral Tiara S, Martín María P, Baseia Iuri Goulart
Centro de Biociências, Departamento de Micologia, Programa de Pós-Graduação em Biologia de Fungos, Universidade Federal de Pernambuco (UFPE), Recife, Brazil.
Centro de Biociências, Departamento de Botânica e Zoologia, Programa de Pós-Graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte (UFRN), Natal, Brazil.
Front Microbiol. 2021 Jul 9;12:689374. doi: 10.3389/fmicb.2021.689374. eCollection 2021.
The order () is represented by gasteroid fungi with expanded and sequestrate basidiomata, known as stinkhorns and false truffles. In phalloids, the first DNA sequence was published in 1997, and after that, some studies aimed to resolve phylogenetic conflicts and propose new species based on DNA markers; however, the number of families and genera in the order still generates controversies among researchers. Thus, this work aims to provide an overview of diversity represented by selected DNA markers available in public databases. We retrieved sequences from DNA databases (GenBank and UNITE) of seven markers: ITS (internal transcribed spacer), nuc-LSU (nuclear large subunit rDNA), nuc-SSU (nuclear small subunit rDNA), mt-SSU (mitochondrial small subunit rDNA), 6 (ATPase subunit 6), 2 (nuclear protein-coding second largest subunit of RNA polymerase), and 1-α (translation elongation factor subunit 1α). To compose our final dataset, all ITS sequences retrieved were subjected to BLASTn searches to identify additional ITS sequences not classified as . Phylogenetic analyses based on Bayesian and maximum likelihood approaches using single and combined markers were conducted. All ITS sequences were clustered with a cutoff of 98% in order to maximize the number of species hypotheses. The geographic origin of sequences was retrieved, as well as additional information on species lifestyle and edibility. We obtained a total of 1,149 sequences, representing 664 individuals. Sequences of 41 individuals were unidentified at genus level and were assigned to five distinct families. We recognize seven families and 22 genera in , although the delimitation of some genera must be further revisited in order to recognize only monophyletic groups. Many inconsistencies in species identification are discussed, and the positioning of genera in each family is shown. The clustering revealed 118 species hypotheses, meaning that approximately 20% of all described species in have DNA sequences available. Information related to geographic distribution represents 462 individuals distributed in 46 countries on all continents, except Antarctica. Most genera are saprotrophic with only one putative ectomycorrhizal genus, and 2.1% of the legitimate specific names recognized in are confirmed edible species. Great progress in the molecular analyses of phalloids has already been made over these years, but it is still necessary to solve some taxonomic inconsistencies, mainly at genus level, and generate new data to expand knowledge of the group.
鬼笔目()由具有膨大且包被型担子果的腹菌类真菌代表,即鬼笔和假块菌。在鬼笔类中,首个DNA序列于1997年发表,此后,一些研究旨在解决系统发育冲突并基于DNA标记提出新物种;然而,该目的科和属的数量在研究人员中仍存在争议。因此,本研究旨在概述公共数据库中可用的选定DNA标记所代表的多样性。我们从DNA数据库(GenBank和UNITE)中检索了七个标记的序列:ITS(内部转录间隔区)、nuc-LSU(核大亚基rDNA)、nuc-SSU(核小亚基rDNA)、mt-SSU(线粒体小亚基rDNA)、6(ATP酶亚基6)、2(RNA聚合酶的核蛋白编码第二大亚基)和1-α(翻译延伸因子亚基1α)。为构建我们的最终数据集,对所有检索到的ITS序列进行BLASTn搜索,以识别未归类为的其他ITS序列。使用单一和组合标记基于贝叶斯和最大似然方法进行系统发育分析。所有ITS序列以98%的截断值进行聚类,以最大化物种假设的数量。检索了序列的地理起源以及有关物种生活方式和可食性的其他信息。我们总共获得了1149个序列,代表664个个体。41个个体的序列在属水平上未鉴定,并被归入五个不同的科。我们认可鬼笔目中有七个科和22个属,尽管一些属的界定必须进一步重新审视,以便只认可单系类群。讨论了物种鉴定中的许多不一致之处,并展示了各属在每个科中的定位。聚类揭示了118个物种假设,这意味着鬼笔目中所有已描述物种中约20%有可用的DNA序列。与地理分布相关的信息代表分布在除南极洲以外各大洲46个国家的462个个体。大多数属是腐生的,只有一个假定的外生菌根属,并且鬼笔目中认可的合法种名中有2.1%是已确认的可食物种。这些年来,鬼笔类的分子分析已经取得了很大进展,但仍有必要解决一些分类学上的不一致之处,主要是在属水平上,并生成新数据以扩展对该类群的认识。