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2005 - 2019年日本传播的长期动态

Long-term dynamics of transmission in Japan, 2005-2019.

作者信息

Misumi Megumi, Nishiura Hiroshi

机构信息

Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan.

Rumoi City Hospital, Rumoi, Hokkaido, Japan.

出版信息

PeerJ. 2021 Jul 12;9:e11769. doi: 10.7717/peerj.11769. eCollection 2021.

Abstract

continues to evolve, adjusting its pathogenesis and transmissibility. In the present study, we systematically collected datasets on outbreaks in Japan from 2005 to 2019 and analyzed time-dependent changes in the asymptomatic ratio, the probability of virus detection, and the probability of infection given exposure. Reports of 1,728 outbreaks were published, and feces from all involved individuals, including those with asymptomatic infection, were tested for virus in 434 outbreaks. We found that the outbreak size did not markedly change over this period, but the variance in outbreak size increased during the winter (November-April). Assuming that natural history parameters did not vary over time, the asymptomatic ratio, the probability of virus detection, and the probability of infection given exposure were estimated to be 18.6%, 63.3% and 84.5%, respectively. However, a model with time-varying natural history parameters yielded better goodness-of-fit and suggested that the asymptomatic ratio varied by year. The asymptomatic ratio was as high as 25.8% for outbreaks caused by genotype GII.4 noroviruses. We conclude that transmissibility has not changed markedly since 2005, and that yearly variation in the asymptomatic ratio could potentially be explained by the circulating dominant genotype.

摘要

它持续演变,不断调整其发病机制和传播性。在本研究中,我们系统收集了2005年至2019年日本疫情的数据集,并分析了无症状感染率、病毒检测概率以及暴露后感染概率随时间的变化情况。共发表了1728起疫情报告,其中434起疫情对所有相关个体(包括无症状感染者)的粪便进行了病毒检测。我们发现,在此期间疫情规模没有明显变化,但冬季(11月至次年4月)疫情规模的方差有所增加。假设自然史参数不随时间变化,估计无症状感染率、病毒检测概率和暴露后感染概率分别为18.6%、63.3%和84.5%。然而,一个自然史参数随时间变化的模型拟合效果更好,表明无症状感染率逐年变化。由GII.4型诺如病毒引起的疫情,其无症状感染率高达25.8%。我们得出结论,自2005年以来传播性没有明显变化,无症状感染率的逐年变化可能由流行的优势基因型所解释。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f31/8280881/9b52ecb0d0d5/peerj-09-11769-g001.jpg

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