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诺如病毒基因群和基因型的更新分类。

Updated classification of norovirus genogroups and genotypes.

机构信息

Division of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.

Department of Viroscience, Erasmus University Medical Center, Rotterdam, The Netherlands.

出版信息

J Gen Virol. 2019 Oct;100(10):1393-1406. doi: 10.1099/jgv.0.001318.

Abstract

Noroviruses are genetically diverse RNA viruses associated with acute gastroenteritis in mammalian hosts. Phylogenetically, they can be segregated into different genogroups as well as P (polymerase)-groups and further into genotypes and P-types based on amino acid diversity of the complete VP1 gene and nucleotide diversity of the RNA-dependent RNA polymerase (RdRp) region of ORF1, respectively. In recent years, several new noroviruses have been reported that warrant an update of the existing classification scheme. Using previously described 2× standard deviation (sd) criteria to group sequences into separate clusters, we expanded the number of genogroups to 10 (GI-GX) and the number of genotypes to 48 (9 GI, 27 GII, 3 GIII, 2 GIV, 2 GV, 2 GVI and 1 genotype each for GVII, GVIII, GIX [formerly GII.15] and GX). Viruses for which currently only one sequence is available in public databases were classified into tentative new genogroups (GNA1 and GNA2) and genotypes (GII.NA1, GII.NA2 and GIV.NA1) with their definitive assignment awaiting additional related sequences. Based on nucleotide diversity in the RdRp region, noroviruses can be divided into 60 P-types (14 GI, 37 GII, 2 GIII, 1 GIV, 2 GV, 2 GVI, 1 GVII and 1 GX), 2 tentative P-groups and 14 tentative P-types. Future classification and nomenclature updates will be based on complete genome sequences and will be coordinated and disseminated by the international norovirus classification-working group.

摘要

诺如病毒是一种遗传多样性的 RNA 病毒,与哺乳动物宿主的急性胃肠炎有关。从系统发生上看,它们可以根据完整 VP1 基因的氨基酸多样性和 ORF1 的 RNA 依赖性 RNA 聚合酶 (RdRp) 区的核苷酸多样性,分为不同的基因群以及 P-群,进一步分为基因型和 P-型。近年来,已经报道了几种新的诺如病毒,需要对现有的分类方案进行更新。使用先前描述的 2×标准偏差 (sd) 标准将序列分组到单独的簇中,我们将基因群的数量扩展到 10 个(GI-GX),基因型的数量扩展到 48 个(9 个 GI、27 个 GII、3 个 GIII、2 个 GIV、2 个 GV、2 个 GVI 和 1 个基因型分别为 GVII、GVIII、GX[以前的 GII.15]和 GX)。目前在公共数据库中只有一个序列的病毒被分类为暂定的新基因群(GNA1 和 GNA2)和基因型(GII.NA1、GII.NA2 和 GIV.NA1),其明确归属有待更多相关序列的确定。根据 RdRp 区的核苷酸多样性,诺如病毒可分为 60 个 P-型(14 个 GI、37 个 GII、2 个 GIII、1 个 GIV、2 个 GV、2 个 GVI、1 个 GVII 和 1 个 GX)、2 个暂定 P-群和 14 个暂定 P-型。未来的分类和命名更新将基于完整的基因组序列,并由国际诺如病毒分类工作组进行协调和发布。

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