Islam Shahee, Mukhopadhyay Chaitali
Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India.
ACS Omega. 2021 Jul 12;6(28):17861-17869. doi: 10.1021/acsomega.1c01145. eCollection 2021 Jul 20.
Understanding the molecular mechanisms by which amyloidogenic proteins interact with membranes is a challenging task. Amyloid accumulates from many human diseases have been observed to contain membrane lipids. In this work, coarse-grained molecular dynamics simulations have been used to inspect hen egg white lysozyme (HEWL) aggregation and membrane association in the presence of a pure POPC (1-palmitoyl-2-oleoyl--glycero-3-phosphocholine) bilayer and a POPC and POPG (1-palmitoyl-2-oleoyl--glycero-3-phosphatidylglycerol) mixed bilayer. It was observed that, in both cases, two HEWLs formed aggregates. In the presence of a mixed bilayer, after aggregation, the aggregated system started to interact with the membrane. It has been found that one of the lysozymes which came closer to the mixed bilayer unfolded more. The process of the initial insertion of an aggregated system in the mixed bilayer has been analyzed. The structural rearrangements of the protein and lipids were analyzed as well along the course of the simulation. Although with a pure POPC bilayer, aggregation was observed, the aggregated system moved away from the membrane. We believe that our study will provide considerable insights into lysozyme aggregation in the presence of a membrane environment.
了解淀粉样蛋白与膜相互作用的分子机制是一项具有挑战性的任务。已观察到许多人类疾病中积累的淀粉样蛋白含有膜脂。在这项工作中,粗粒度分子动力学模拟已被用于研究在纯POPC(1-棕榈酰-2-油酰基-sn-甘油-3-磷酸胆碱)双层以及POPC和POPG(1-棕榈酰-2-油酰基-sn-甘油-3-磷脂酰甘油)混合双层存在的情况下,鸡蛋清溶菌酶(HEWL)的聚集和与膜的结合。观察到,在这两种情况下,两个HEWL形成聚集体。在混合双层存在的情况下,聚集后,聚集系统开始与膜相互作用。已发现,靠近混合双层的其中一个溶菌酶展开得更多。分析了聚集系统在混合双层中的初始插入过程。在模拟过程中还分析了蛋白质和脂质的结构重排。尽管在纯POPC双层存在的情况下观察到了聚集,但聚集系统从膜上移开。我们相信我们的研究将为膜环境存在下溶菌酶的聚集提供相当多的见解。