Rockefeller University, New York, USA.
Dev Biol. 2021 Nov;479:99-106. doi: 10.1016/j.ydbio.2021.07.012. Epub 2021 Jul 27.
Vertebrate genome evolution remains a hotly debated topic, specifically as regards the number and the timing of putative rounds of whole genome duplication events. In this study, I sought to shed light to this conundrum through assessing the evolutionary history of the oxytocin/vasotocin receptor family. I performed ancestral analyses of the genomic segments containing oxytocin and vasotocin receptors (OTR-VTRs) by mapping them back to the reconstructed ancestral vertebrate/chordate karyotypes reported in five independent studies (Nakatani et al., 2007; Putnam et al., 2008; Smith and Keinath, 2015; Smith et al., 2018; Simakov et al., 2020) and found that two alternative scenarios can account for their evolution: one consistent with one round of whole genome duplication in the common ancestor of lampreys and gnathostomes, followed by segmental duplications in both lineages, and another consistent with two rounds of whole genome duplication, with the first occurring in the gnathostome-lamprey ancestor and the second in the jawed vertebrate ancestor. Combining the data reported here with synteny and phylogeny data reported in our previous study (Theofanopoulou et al., 2021), I put forward that a single round of whole genome duplication scenario is more consistent with the synteny and evolution of chromosomes where OTR-VTRs are encountered, without excluding the possibility of a scenario including two rounds of whole genome duplication. Although the analysis of one gene family is not able to capture the full complexity of vertebrate genome evolution, this study can provide solid insight, since the gene family used here has been meticulously analyzed for its genes' orthologous and paralogous relationships across species using high quality genomes.
脊椎动物基因组的进化仍然是一个备受争议的话题,特别是关于全基因组复制事件的轮数和时间。在这项研究中,我试图通过评估催产素/加压素受体家族的进化历史来阐明这个难题。我通过将包含催产素和加压素受体(OTR-VTR)的基因组片段映射回在五项独立研究中报道的重建的祖先脊椎动物/脊索动物核型(Nakatani 等人,2007 年;Putnam 等人,2008 年;Smith 和 Keinath,2015 年;Smith 等人,2018 年;Simakov 等人,2020 年),对它们的进化进行了祖先分析,发现有两种替代方案可以解释它们的进化:一种与在七鳃鳗和有颌类动物的共同祖先中发生的一轮全基因组复制一致,随后在两个谱系中发生了片段复制,另一种与两轮全基因组复制一致,第一轮发生在有颌类动物-七鳃鳗祖先中,第二轮发生在有颌脊椎动物祖先中。将这里报道的数据与我们之前研究(Theofanopoulou 等人,2021 年)中报道的同线性和系统发育数据相结合,我提出一轮全基因组复制的情景更符合 OTR-VTR 遇到的染色体的同线性和进化,而不排除包括两轮全基因组复制的情景的可能性。虽然对一个基因家族的分析不能捕捉到脊椎动物基因组进化的全部复杂性,但这项研究可以提供可靠的见解,因为这里使用的基因家族已经使用高质量的基因组对其基因的同源和旁系关系进行了精心分析。