Department of Medical Microbiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, P.O. Box 9101, 6500 HB, The Netherlands.
Nucleic Acids Res. 2021 Sep 7;49(15):8886-8899. doi: 10.1093/nar/gkab640.
In the germline of animals, PIWI interacting (pi)RNAs protect the genome against the detrimental effects of transposon mobilization. In Drosophila, piRNA-mediated cleavage of transposon RNA triggers the production of responder piRNAs via ping-pong amplification. Responder piRNA 3' end formation by the nuclease Zucchini is coupled to the production of downstream trailer piRNAs, expanding the repertoire of transposon piRNA sequences. In Aedes aegypti mosquitoes, piRNAs are generated from viral RNA, yet, it is unknown how viral piRNA 3' ends are formed and whether viral RNA cleavage gives rise to trailer piRNA production. Here we report that in Ae. aegypti, virus- and transposon-derived piRNAs have sharp 3' ends, and are biased for downstream uridine residues, features reminiscent of Zucchini cleavage of precursor piRNAs in Drosophila. We designed a reporter system to study viral piRNA 3' end formation and found that targeting viral RNA by abundant endogenous piRNAs triggers the production of responder and trailer piRNAs. Using this reporter, we identified the Ae. aegypti orthologs of Zucchini and Nibbler, two nucleases involved in piRNA 3' end formation. Our results furthermore suggest that autonomous piRNA production from viral RNA can be triggered and expanded by an initial cleavage event guided by genome-encoded piRNAs.
在动物的种系中,PIWI 相互作用(pi)RNAs 保护基因组免受转座子激活的有害影响。在果蝇中,piRNA 介导的转座子 RNA 的切割通过乒乓扩增触发响应 piRNA 的产生。核酸内切酶 Zucchini 介导的响应 piRNA 3' 端的形成与下游尾随 piRNA 的产生相关联,扩展了转座子 piRNA 序列的 repertoire。在埃及伊蚊中,piRNAs 是由病毒 RNA 产生的,然而,尚不清楚病毒 piRNA 3' 端是如何形成的,以及病毒 RNA 的切割是否会导致尾随 piRNA 的产生。在这里,我们报告在 Ae. aegypti 中,病毒和转座子衍生的 piRNAs 具有尖锐的 3' 端,并且偏向于下游的尿嘧啶残基,这与 Drosophila 中 Zucchini 切割前体 piRNAs 的特征相似。我们设计了一个报告系统来研究病毒 piRNA 3' 端的形成,发现通过丰富的内源性 piRNAs 靶向病毒 RNA 会触发响应 piRNA 和尾随 piRNA 的产生。使用这个报告系统,我们鉴定了 Ae. aegypti 中 Zucchini 和 Nibbler 的同源物,这两种核酸酶都参与 piRNA 3' 端的形成。我们的结果进一步表明,病毒 RNA 自主产生的 piRNA 可以通过由基因组编码的 piRNAs 指导的初始切割事件被触发和扩展。