Fenanir Fares, Semmeq Abderrahmane, Benguerba Yacine, Badawi Michael, Dziurla Marie-Antoinette, Amira Smain, Laouer Hocine
Laboratory of Valorization of Natural and biological Resources, University Ferhat Abbas, Sétif, Algeria.
Laboratoire de Physique et Chimie Théoriques (UMR 7019), CNRS-Université de Lorraine, Saint-Avold, France.
J Biomol Struct Dyn. 2022;40(22):11571-11586. doi: 10.1080/07391102.2021.1960197. Epub 2021 Aug 6.
The present study aimed to experimentally identify the essential oil of Algerian L. and to model the interaction of some known anti-inflammatory molecules with two key enzymes involved in inflammation, 5-Lypoxygenase (5-LO) and leukotriene A4 hydrolase (LTA4H). Gas chromatography/gas chromatography-mass spectrometry (GC/GC-MS) revealed that 92.7% of the essential oil contains 35 compounds, including oxygenated sesquiterpenes (44.2%), oxygenated monoterpenes (30.2%), monoterpene hydrocarbons (11.8%) and sesquiterpene hydrocarbons (6.5%). The major identified oxygenated terpenes are humulene oxide II, caryophyllene oxide, khusinol, agarospirol, spathulinol and trans-pinocarveol Myrtenol and α-terpineol are known to exhibit anti-inflammatory activities. Several complexes obtained after docking the natural terpenes with 5-LO and LTA4H have shown strong hydrogen bonding interactions. The best docking energies were found with α-terpineol, Myrtenol and khusinol. The interaction between the natural products and amino-acid residues HIS367, ILE673 and GLN363 appears to be critical for 5-LO inhibition, while the interaction with residues GLU271, HIS295, TYR383, TYR378, GLU318, GLU296 and ASP375 is critical for LTA4H inhibition. Molecular dynamics (MD) trajectories of the selected docked complexes showed stable backbone root mean square deviation (RMSD), supporting the stability of the natural product-enzyme interaction.Communicated by Ramaswamy H. Sarma.
本研究旨在通过实验鉴定阿尔及利亚某植物的精油,并模拟一些已知抗炎分子与炎症相关的两种关键酶——5-脂氧合酶(5-LO)和白三烯A4水解酶(LTA4H)之间的相互作用。气相色谱/气相色谱-质谱联用(GC/GC-MS)分析表明,该精油的92.7%由35种化合物组成,包括氧化倍半萜(44.2%)、氧化单萜(30.2%)、单萜烃类(11.8%)和倍半萜烃类(6.5%)。鉴定出的主要氧化萜类化合物有氧化律草烯II、氧化石竹烯、愈创木醇、琼脂螺醇、匙叶桉油烯醇和反式松油烯醇。已知桃金娘烯醇和α-松油醇具有抗炎活性。天然萜类化合物与5-LO和LTA4H对接后得到的几种复合物显示出强烈的氢键相互作用。发现α-松油醇、桃金娘烯醇和愈创木醇的对接能量最佳。天然产物与氨基酸残基HIS367、ILE673和GLN363之间的相互作用似乎对5-LO抑制至关重要,而与残基GLU271、HIS295、TYR383、TYR378、GLU318、GLU296和ASP375的相互作用对LTA4H抑制至关重要。所选对接复合物的分子动力学(MD)轨迹显示出稳定的主链均方根偏差(RMSD),支持了天然产物-酶相互作用的稳定性。由拉马斯瓦米·H·萨尔马传达。