OpenPhi：用于访问飞利浦 iSyntax 全玻片图像的接口，用于计算病理学。
OpenPhi: an interface to access Philips iSyntax whole slide images for computational pathology.
机构信息
Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, 171 77 Stockholm, Sweden.
Faculty of Medicine and Health Technology, Tampere University, 33014 Tampere, Finland.
出版信息
Bioinformatics. 2021 Nov 5;37(21):3995-3997. doi: 10.1093/bioinformatics/btab578.
SUMMARY
Digital pathology enables applying computational methods, such as deep learning, in pathology for improved diagnostics and prognostics, but lack of interoperability between whole slide image formats of different scanner vendors is a challenge for algorithm developers. We present OpenPhi-Open PatHology Interface, an Application Programming Interface for seamless access to the iSyntax format used by the Philips Ultra Fast Scanner, the first digital pathology scanner approved by the United States Food and Drug Administration. OpenPhi is extensible and easily interfaced with existing vendor-neutral applications.
AVAILABILITY AND IMPLEMENTATION
OpenPhi is implemented in Python and is available as open-source under the MIT license at: https://gitlab.com/BioimageInformaticsGroup/openphi. The Philips Software Development Kit is required and available at: https://www.openpathology.philips.com. OpenPhi version 1.1.1 is additionally provided as Supplementary Data.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
数字病理学使应用计算方法（如深度学习）成为可能，从而改善病理学的诊断和预后，但不同扫描仪供应商的全玻片图像格式之间缺乏互操作性，这给算法开发者带来了挑战。我们提出了 OpenPhi-Open PatHology Interface，这是一种应用程序编程接口，可以无缝访问飞利浦 Ultra Fast Scanner 使用的 iSyntax 格式，这是第一个获得美国食品和药物管理局批准的数字病理学扫描仪。OpenPhi 具有可扩展性，并且可以轻松与现有的供应商中立应用程序接口。
可用性和实现
OpenPhi 是用 Python 实现的，并在 MIT 许可证下作为开源软件在以下网址提供：https://gitlab.com/BioimageInformaticsGroup/openphi。需要使用飞利浦软件开发工具包，并可在以下网址获得：https://www.openpathology.philips.com。OpenPhi 版本 1.1.1 也作为补充数据提供。
补充信息
补充数据可在生物信息学在线获得。
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