Natera, Inc., San Carlos, CA, USA.
Baylor Genetics, Houston, TX, USA.
Ultrasound Obstet Gynecol. 2022 Jan;59(1):33-39. doi: 10.1002/uog.23756.
OBJECTIVE: To assess the performance of a non-invasive prenatal screening test (NIPT) for a panel of dominant single-gene disorders (SGD) with a combined population incidence of 1 in 600. METHODS: Cell-free fetal DNA isolated from maternal plasma samples accessioned from 14 April 2017 to 27 November 2019 was analyzed by next-generation sequencing, targeting 30 genes, to look for pathogenic or likely pathogenic variants implicated in 25 dominant conditions. The conditions included Noonan spectrum disorders, skeletal disorders, craniosynostosis syndromes, Cornelia de Lange syndrome, Alagille syndrome, tuberous sclerosis, epileptic encephalopathy, SYNGAP1-related intellectual disability, CHARGE syndrome, Sotos syndrome and Rett syndrome. NIPT-SGD was made available as a clinical service to women with a singleton pregnancy at ≥ 9 weeks' gestation, with testing on maternal and paternal genomic DNA to assist in interpretation. A minimum of 4.5% fetal fraction was required for test interpretation. Variants identified in the mother were deemed inconclusive with respect to fetal carrier status. Confirmatory prenatal or postnatal diagnostic testing was recommended for all screen-positive patients and follow-up information was requested. The screen-positive rates with respect to the clinical indication for testing were evaluated. RESULTS: A NIPT-SGD result was available for 2208 women, of which 125 (5.7%) were positive. Elevated test-positive rates were observed for referrals with a family history of a disorder on the panel (20/132 (15.2%)) or a primary indication of fetal long-bone abnormality (60/178 (33.7%)), fetal craniofacial abnormality (6/21 (28.6%)), fetal lymphatic abnormality (20/150 (13.3%)) or major fetal cardiac defect (4/31 (12.9%)). For paternal age ≥ 40 years as a sole risk factor, the test-positive rate was 2/912 (0.2%). Of the 125 positive cases, follow-up information was available for 67 (53.6%), with none classified as false-positive. No false-negative cases were identified. CONCLUSIONS: NIPT can assist in the early detection of a set of SGD, particularly when either abnormal ultrasound findings or a family history is present. Additional clinical studies are needed to evaluate the optimal design of the gene panel, define target populations and assess patient acceptability. NIPT-SGD offers a safe and early prenatal screening option. © 2021 The Authors. Ultrasound in Obstetrics & Gynecology published by John Wiley & Sons Ltd on behalf of International Society of Ultrasound in Obstetrics and Gynecology.
目的:评估一种用于一组显性单基因疾病(SGD)的非侵入性产前筛查测试(NIPT)的性能,该疾病的综合人群发病率为 1/600。
方法:从 2017 年 4 月 14 日至 2019 年 11 月 27 日采集的母亲血浆样本中分离出游离胎儿 DNA,通过下一代测序进行分析,靶向 30 个基因,寻找与 25 种显性疾病相关的致病性或可能致病性变异。这些疾病包括努南综合征、骨骼疾病、颅缝早闭综合征、科恩利格综合征、阿莱尔综合征、结节性硬化症、癫痫性脑病、SYNGAP1 相关智力障碍、CHARGE 综合征、Sotos 综合征和雷特综合征。NIPT-SGD 作为一项临床服务提供给妊娠 9 周以上的单胎孕妇,对母亲和父亲的基因组 DNA 进行检测以协助解释。需要至少 4.5%的胎儿分数进行测试解释。母亲中发现的变异被认为对胎儿携带者状态不确定。所有筛查阳性患者均建议进行确认性产前或产后诊断检测,并要求提供随访信息。根据检测的临床指征评估了筛查阳性率。
结果:2208 名女性的 NIPT-SGD 结果可用,其中 125 名(5.7%)为阳性。在有该组疾病家族史(20/132(15.2%))或胎儿长骨异常(60/178(33.7%))、胎儿颅面异常(6/21(28.6%))、胎儿淋巴异常(20/150(13.3%))或主要胎儿心脏缺陷(4/31(12.9%))的主要临床指征的情况下,检测阳性率较高。对于仅作为单一危险因素的父亲年龄≥40 岁,阳性率为 2/912(0.2%)。在 125 例阳性病例中,有 67 例(53.6%)可获得随访信息,均无假阳性病例。未发现假阴性病例。
结论:NIPT 可协助早期检测一组 SGD,尤其是当存在异常超声发现或家族史时。需要进行更多的临床研究来评估基因组合的最佳设计、定义目标人群和评估患者的可接受性。NIPT-SGD 提供了一种安全的早期产前筛查选择。© 2021 作者。超声在妇产科由 John Wiley & Sons Ltd 代表国际妇产科超声学会出版。
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