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多位点序列分型揭示安达曼群岛存在马铃薯感染源的跨界引入:对岛屿农业的潜在威胁。

Transboundary introduction of potato-infecting in the Andaman Islands revealed by multilocus sequence typing: A potential threat to island agriculture.

作者信息

K Sakthivel, A Balamurugan, M Ashajyothi, Yadav Soobedar, V Baskaran, K Abirami, R K Gautam, A Kumar

机构信息

Division of Field Crop Improvement and Protection, ICAR- Central Island Agricultural Research Institute, Port Blair 744 105, India.

出版信息

J Biosci. 2021;46.

Abstract

Wilting of potato plants with an incidence of 20-30 % was observed for the first time in the agricultural farms of Andaman Islands, India. The infected plants showed wilting syndrome that included downward drooping of leaves, yellowing, and collapse of the entire plants. Characteristic milky-white exudate from the infected stem indicated bacterial etiology of the disease. Upon streaking onto 2, 3, 5 triphenyl-tetrazolium chloride amended nutrient medium, the bacterial exudate yielded characteristic creamy-white, fluidal, irregular colonies with the pink center. Upon inoculation, the randomly picked bacterial colonies, AN_PRSGr and AN_PRSCh, representing the two locations, incited wilt symptoms on one-month-old potato plants. The host range studies revealed that the isolates were pathogenic on tomato and eggplant but non-pathogenic to chili and (wild eggplant). The 16S rRNA gene sequencing and the -specific PCR test confirmed the identity of AN_PRSGr and AN_PRSCh as . Intra-species level classification revealed their identity as strains of race 1, biovar 3, and phylotype-I. Multilocus sequence typing (MLST)-based in-depth sequence alignment for phylogenetic analysis revealed the isolates AN_PRSGr and AN_PRSCh clustered with two mainland race 1/biovar 3/phylotype-I isolates of Kerala, India. However, the allelic profile-based goeBURST-analysis placed them as singletons in the global collection of , conforming intra-racial/ intra-phylotype diversity within race 1/biovar3/phylotype-I strains. The molecular characterization.

摘要

在印度安达曼群岛的农场中,首次观察到马铃薯植株出现萎蔫现象,发病率为20%-30%。受感染的植株表现出萎蔫综合征,包括叶片向下耷拉、发黄以及整株植物枯萎。受感染茎部有特征性的乳白色渗出物,表明该病由细菌引起。将细菌渗出物划线接种到添加了2,3,5-三苯基氯化四氮唑的营养培养基上后,产生了特征性的乳白色、流体状、不规则菌落,中心为粉红色。接种后,从代表两个地点的随机挑选的细菌菌落AN_PRSGr和AN_PRSCh,在1月龄马铃薯植株上引发了萎蔫症状。寄主范围研究表明,这些分离株对番茄和茄子致病,但对辣椒和(野生茄子)不致病。16S rRNA基因测序和特异性PCR检测证实AN_PRSGr和AN_PRSCh的身份为。种内水平分类显示它们为1号小种、生物变种3和系统型I的菌株。基于多位点序列分型(MLST)的系统发育分析深度序列比对显示,分离株AN_PRSGr和AN_PRSCh与印度喀拉拉邦的两个大陆1号小种/生物变种3/系统型I分离株聚类。然而,基于等位基因图谱的goeBURST分析将它们在全球的集合中列为单例,符合1号小种/生物变种3/系统型I菌株内的种内/系统型多样性。分子特征分析。

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