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利用链接预测进行多病种预测。

Multimorbidity prediction using link prediction.

机构信息

Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham, B15 2TT, UK.

Institute of Translational Medicine, University of Birmingham, Birmingham, B15 2TT, UK.

出版信息

Sci Rep. 2021 Aug 12;11(1):16392. doi: 10.1038/s41598-021-95802-0.

Abstract

Multimorbidity, frequently associated with aging, can be operationally defined as the presence of two or more chronic conditions. Predicting the likelihood of a patient with multimorbidity to develop a further particular disease in the future is one of the key challenges in multimorbidity research. In this paper we are using a network-based approach to analyze multimorbidity data and develop methods for predicting diseases that a patient is likely to develop. The multimorbidity data is represented using a temporal bipartite network whose nodes represent patients and diseases and a link between these nodes indicates that the patient has been diagnosed with the disease. Disease prediction then is reduced to a problem of predicting those missing links in the network that are likely to appear in the future. We develop a novel link prediction method for static bipartite network and validate the performance of the method on benchmark datasets. By using a probabilistic framework, we then report on the development of a method for predicting future links in the network, where links are labelled with a time-stamp. We apply the proposed method to three different multimorbidity datasets and report its performance measured by different performance metrics including AUC, Precision, Recall, and F-Score.

摘要

多病共存通常与衰老有关,可以操作定义为存在两种或多种慢性疾病。预测多病共存患者未来可能患上特定疾病的可能性是多病共存研究的关键挑战之一。在本文中,我们使用基于网络的方法来分析多病共存数据,并开发用于预测患者可能患上的疾病的方法。使用时间二分网络表示多病共存数据,其节点表示患者和疾病,节点之间的链接表示患者已被诊断出患有该疾病。疾病预测然后简化为预测网络中那些未来可能出现的缺失链接的问题。我们为静态二分网络开发了一种新的链接预测方法,并在基准数据集上验证了该方法的性能。然后,我们使用概率框架报告了一种用于预测网络中未来链接的方法的开发情况,其中链接带有时间戳标签。我们将所提出的方法应用于三个不同的多病共存数据集,并报告了通过不同性能指标(包括 AUC、精度、召回率和 F 分数)衡量的性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea04/8360941/42b72c40a802/41598_2021_95802_Fig1_HTML.jpg

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