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三个中国家庭中与疣状表皮发育不良相关的新基因和变异体的鉴定及剪接特征分析

Identification and Splicing Characterization of Novel and Variants Associated With Epidermodysplasia Verruciformis in Three Chinese Families.

作者信息

Wang Rongrong, Liu Jiawei, Yang Xueting, Habulieti Xiaerbati, Yu Xue, Sun Liwei, Zhang Han, Sun Yang, Ma Donglai, Zhang Xue

机构信息

McKusick-Zhang Center for Genetic Medicine, State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China.

Department of Dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing, China.

出版信息

Front Genet. 2021 Jul 27;12:712275. doi: 10.3389/fgene.2021.712275. eCollection 2021.

Abstract

: Epidermodysplasia verruciformis (EV) is a rare genodermatosis characterized by abnormal susceptibility to human beta papillomavirus infections and a particular propensity to develop non-melanoma skin cancers (NMSCs). The majority of EV cases are caused by biallelic null variants in , , and . This study aimed to identify disease-causing variants in three Chinese families with EV and to elucidate their molecular pathogenesis. : Genomic DNA from the probands of three EV families was analyzed by whole-exome sequencing (WES). cDNA sequencing was performed to investigate abnormal splicing of the variants. Quantitative RT-PCR (qRT-PCR) was conducted to quantify the mRNA expression of mutant and . : Whole-exome sequencing identified two novel homozygous variants (c.2278-2A > G in and c.559G > A in ) in families 1 and 2, respectively. In family 3, WES revealed a recurrent and a novel compound heterozygous variant, c.559G > A and c.1389G > A, in . The c.2278-2A > G variant led to the skipping of exon 19 and resulted in premature termination at codon 776. Subsequent qRT-PCR revealed that the aberrantly spliced transcript was partly degraded. Notably, the c.559G > A variant created a novel acceptor splice site at c.561 and yielded three different aberrant transcripts. qRT-PCR revealed that most of the mutant transcripts were degraded nonsense-mediated mRNA decay (NMD). : We identified three novel disease-causing variants in or in three Chinese families with EV. The EV phenotypes of the three patients were due to a reduction in TMC6 or TMC8. Our findings expand the genetic causes of EV in the Chinese population.

摘要

疣状表皮发育不良(EV)是一种罕见的遗传性皮肤病,其特征是对人β乳头瘤病毒感染异常敏感,且特别容易发生非黑色素瘤皮肤癌(NMSC)。大多数EV病例是由 、 和 中的双等位基因无效变异引起的。本研究旨在鉴定三个中国EV家系中的致病变异,并阐明其分子发病机制。:通过全外显子组测序(WES)分析了三个EV家系先证者的基因组DNA。进行cDNA测序以研究变异的异常剪接。进行定量逆转录聚合酶链反应(qRT-PCR)以定量突变体 和 的mRNA表达。:全外显子组测序分别在家族1和家族2中鉴定出两个新的纯合变异( 中的c.2278-2A>G和 中的c.559G>A)。在家族3中,WES在 中发现了一个复发性和一个新的复合杂合变异,c.559G>A和c.1389G>A。c.2278-2A>G变异导致外显子19跳跃,并导致密码子776处提前终止。随后的qRT-PCR显示异常剪接的转录本部分降解。值得注意的是,c.559G>A变异在c.561处产生了一个新的受体剪接位点,并产生了三种不同的异常转录本。qRT-PCR显示大多数突变转录本通过无义介导的mRNA降解(NMD)被降解。:我们在三个中国EV家系的 或 中鉴定出三个新的致病变异。三名患者的EV表型是由于TMC6或TMC8减少所致。我们的发现扩展了中国人群中EV的遗传病因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ded1/8353250/16d6b377ccfe/fgene-12-712275-g001.jpg

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