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-γ-内酰胺和结构相关代谢物在 Colibactin 和脂肪酸生物合成的交汇处产生。

-Derived γ-Lactams and Structurally Related Metabolites Are Produced at the Intersection of Colibactin and Fatty Acid Biosynthesis.

机构信息

Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States.

Institute of Biomolecular Design & Discovery, Yale University, West Haven, Connecticut 06516, United States.

出版信息

Org Lett. 2021 Sep 3;23(17):6895-6899. doi: 10.1021/acs.orglett.1c02461. Epub 2021 Aug 18.

Abstract

Colibactin is a genotoxic hybrid polyketide-nonribosomal peptide that drives colorectal cancer initiation. While clinical data suggest colibactin genotoxicity is largely caused by the major DNA-cross-linking metabolite, the colibactin locus produces a diverse collection of metabolites with mostly unknown biological activities. Here, we describe 10 new colibactin pathway metabolites () that are dependent on its α-aminomalonyl-carrier protein. The most abundant metabolites, and , were isolated and structurally characterized mainly by nuclear magnetic resonance spectroscopy to be γ-lactam derivatives, and the remaining related structures were inferred via shared biosynthetic logic. Our proposed formation of , which is supported by stereochemical analysis, invokes cross-talk between colibactin and fatty acid biosynthesis, illuminating further the complexity of this diversity-oriented pathway.

摘要

肠菌素是一种具有遗传毒性的杂合聚酮-非核糖体肽,可驱动结直肠癌的发生。虽然临床数据表明肠菌素的遗传毒性主要是由主要的 DNA 交联代谢物引起的,但肠菌素基因座产生了具有多种未知生物学活性的代谢物的多样集合。在这里,我们描述了 10 种新的肠菌素途径代谢物(),它们依赖于其α-氨基丙二酰-载体蛋白。最丰富的代谢物和被分离出来,并通过核磁共振波谱法主要进行结构表征,鉴定为γ-内酰胺衍生物,其余相关结构则通过共有的生物合成逻辑推断得出。我们提出的形成,这得到了立体化学分析的支持,它调用了肠菌素和脂肪酸生物合成之间的交叉对话,进一步阐明了这种具有多样性导向的途径的复杂性。

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本文引用的文献

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Escherichia coli small molecule metabolism at the host-microorganism interface.大肠杆菌在宿主-微生物界面的小分子代谢。
Nat Chem Biol. 2021 Oct;17(10):1016-1026. doi: 10.1038/s41589-021-00807-5. Epub 2021 Sep 22.
2
Molecules from the Microbiome.来自微生物群的分子。
Annu Rev Biochem. 2021 Jun 20;90:789-815. doi: 10.1146/annurev-biochem-080320-115307. Epub 2021 Mar 26.
4
Structure and bioactivity of colibactin.Colibactin 的结构与生物活性。
Bioorg Med Chem Lett. 2020 Aug 1;30(15):127280. doi: 10.1016/j.bmcl.2020.127280. Epub 2020 May 23.
8
Structure elucidation of colibactin and its DNA cross-links.解析 colibactin 的结构及其 DNA 交联物。
Science. 2019 Sep 6;365(6457). doi: 10.1126/science.aax2685. Epub 2019 Aug 8.

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