• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

去 AMP 化复合物的结构阐明了 FICD 拮抗催化活性之间的转换。

Structures of a deAMPylation complex rationalise the switch between antagonistic catalytic activities of FICD.

机构信息

Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.

Institut Laue-Langevin, Grenoble, France.

出版信息

Nat Commun. 2021 Aug 18;12(1):5004. doi: 10.1038/s41467-021-25076-7.

DOI:10.1038/s41467-021-25076-7
PMID:34408154
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8373988/
Abstract

The endoplasmic reticulum (ER) Hsp70 chaperone BiP is regulated by AMPylation, a reversible inactivating post-translational modification. Both BiP AMPylation and deAMPylation are catalysed by a single ER-localised enzyme, FICD. Here we present crystallographic and solution structures of a deAMPylation Michaelis complex formed between mammalian AMPylated BiP and FICD. The latter, via its tetratricopeptide repeat domain, binds a surface that is specific to ATP-state Hsp70 chaperones, explaining the exquisite selectivity of FICD for BiP's ATP-bound conformation both when AMPylating and deAMPylating Thr518. The eukaryotic deAMPylation mechanism thus revealed, rationalises the role of the conserved Fic domain Glu234 as a gatekeeper residue that both inhibits AMPylation and facilitates hydrolytic deAMPylation catalysed by dimeric FICD. These findings point to a monomerisation-induced increase in Glu234 flexibility as the basis of an oligomeric state-dependent switch between FICD's antagonistic activities, despite a similar mode of engagement of its two substrates - unmodified and AMPylated BiP.

摘要

内质网(ER)Hsp70 伴侣蛋白 BiP 受 AMP 化调节,这是一种可逆的失活翻译后修饰。BiP 的 AMP 化和去 AMP 化均由单个 ER 定位酶 FICD 催化。本文呈现了哺乳动物 AMP 化 BiP 和 FICD 之间形成的去 AMP 化 Michaelis 复合物的晶体和溶液结构。后者通过其四肽重复结构域,结合了一个专门针对 ATP 状态 Hsp70 伴侣蛋白的表面,这解释了 FICD 对 BiP 的 ATP 结合构象的高度选择性,无论是在 AMP 化还是去 AMP 化 Thr518 时。因此,揭示的真核去 AMP 化机制,合理化了保守的 Fic 结构域 Glu234 作为一个守门残基的作用,它既抑制 AMP 化,又促进二聚体 FICD 催化的水解去 AMP 化。这些发现指出,单体化诱导的 Glu234 灵活性增加是 FICD 拮抗活性的寡聚状态依赖性开关的基础,尽管其两个底物 - 未修饰和 AMP 化 BiP 的结合方式相似。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/d0ca382eeeb7/41467_2021_25076_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/71e156c89f3b/41467_2021_25076_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/585320c0c760/41467_2021_25076_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/393e0e0cdabc/41467_2021_25076_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/5d4c8d11aa61/41467_2021_25076_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/f8cd953ea963/41467_2021_25076_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/1dc037b3fa52/41467_2021_25076_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/fc10348fe72c/41467_2021_25076_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/d0ca382eeeb7/41467_2021_25076_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/71e156c89f3b/41467_2021_25076_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/585320c0c760/41467_2021_25076_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/393e0e0cdabc/41467_2021_25076_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/5d4c8d11aa61/41467_2021_25076_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/f8cd953ea963/41467_2021_25076_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/1dc037b3fa52/41467_2021_25076_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/fc10348fe72c/41467_2021_25076_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a362/8373988/d0ca382eeeb7/41467_2021_25076_Fig8_HTML.jpg

相似文献

1
Structures of a deAMPylation complex rationalise the switch between antagonistic catalytic activities of FICD.去 AMP 化复合物的结构阐明了 FICD 拮抗催化活性之间的转换。
Nat Commun. 2021 Aug 18;12(1):5004. doi: 10.1038/s41467-021-25076-7.
2
An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP.FICD 在 ER 酶中的寡聚状态依赖性开关调节 BiP 的 AMPylation 和去 AMPylation。
EMBO J. 2019 Oct 4;38(21):e102177. doi: 10.15252/embj.2019102177. Epub 2019 Sep 18.
3
Specificity of AMPylation of the human chaperone BiP is mediated by TPR motifs of FICD.FICD 的 TPR 基序介导人伴侣蛋白 BiP 的 AMPylation 的特异性。
Nat Commun. 2021 Apr 23;12(1):2426. doi: 10.1038/s41467-021-22596-0.
4
FICD acts bifunctionally to AMPylate and de-AMPylate the endoplasmic reticulum chaperone BiP.FICD具有双重功能,可对内质网伴侣蛋白BiP进行腺苷酸化和去腺苷酸化。
Nat Struct Mol Biol. 2017 Jan;24(1):23-29. doi: 10.1038/nsmb.3337. Epub 2016 Dec 5.
5
A Ca-regulated deAMPylation switch in human and bacterial FIC proteins.钙离子调控的人源和细菌 FIC 蛋白去腺苷酸化开关。
Nat Commun. 2019 Mar 8;10(1):1142. doi: 10.1038/s41467-019-09023-1.
6
Fic-mediated deAMPylation is not dependent on homodimerization and rescues toxic AMPylation in flies.Fic 介导的去腺苷酸化不依赖于同源二聚化,并能挽救果蝇中的毒性腺苷酸化。
J Biol Chem. 2017 Dec 22;292(51):21193-21204. doi: 10.1074/jbc.M117.799296. Epub 2017 Oct 31.
7
Infancy-onset diabetes caused by de-regulated AMPylation of the human endoplasmic reticulum chaperone BiP.由人类内质网伴侣蛋白 BiP 的 AMPylation 失调引起的婴儿期发病型糖尿病。
EMBO Mol Med. 2023 Mar 8;15(3):e16491. doi: 10.15252/emmm.202216491. Epub 2023 Jan 27.
8
AMPylation matches BiP activity to client protein load in the endoplasmic reticulum.AMP化使内质网中BiP的活性与底物蛋白负载量相匹配。
Elife. 2015 Dec 17;4:e12621. doi: 10.7554/eLife.12621.
9
AMPylation and Endoplasmic Reticulum Protein Folding Homeostasis.腺苷酸化与内质网蛋白质折叠稳态
Cold Spring Harb Perspect Biol. 2023 Mar 1;15(3):a041265. doi: 10.1101/cshperspect.a041265.
10
Investigation of the Detailed AMPylated Reaction Mechanism for the Huntingtin Yeast-Interacting Protein E Enzyme HYPE.对亨廷顿酵母相互作用蛋白 E 酶 HYPE 的详细 AMP 化反应机制的研究。
Int J Mol Sci. 2021 Jun 29;22(13):6999. doi: 10.3390/ijms22136999.

引用本文的文献

1
The rise of AMPylation: from bacterial beginnings to modern implications in health and disease.腺苷酸化的兴起:从细菌起源到对健康与疾病的现代影响
Biochem Soc Trans. 2025 Aug 29;53(4):763-774. doi: 10.1042/BST20253056.
2
Loss of FIC-1-mediated AMPylation activates the UPRER and upregulates cytosolic HSP70 chaperones to suppress polyglutamine toxicity.FIC-1介导的AMP化作用丧失会激活内质网未折叠蛋白反应(UPRER)并上调胞质热休克蛋白70(HSP70)伴侣蛋白,以抑制多聚谷氨酰胺毒性。
PLoS Genet. 2025 Jun 13;21(6):e1011723. doi: 10.1371/journal.pgen.1011723. eCollection 2025 Jun.
3
Small-Molecule FICD Inhibitors Suppress Endogenous and Pathologic FICD-Mediated Protein AMPylation.

本文引用的文献

1
Specificity of AMPylation of the human chaperone BiP is mediated by TPR motifs of FICD.FICD 的 TPR 基序介导人伴侣蛋白 BiP 的 AMPylation 的特异性。
Nat Commun. 2021 Apr 23;12(1):2426. doi: 10.1038/s41467-021-22596-0.
2
Calcium depletion challenges endoplasmic reticulum proteostasis by destabilising BiP-substrate complexes.钙耗竭通过破坏 BiP 底物复合物来挑战内质网的蛋白质稳态。
Elife. 2020 Dec 9;9:e62601. doi: 10.7554/eLife.62601.
3
Interdomain Flexibility within NADPH Oxidase Suggested by SANS Using LMNG Stealth Carrier.
小分子FICD抑制剂可抑制内源性和病理性FICD介导的蛋白质AMP化。
ACS Chem Biol. 2025 Apr 18;20(4):880-895. doi: 10.1021/acschembio.4c00847. Epub 2025 Mar 4.
4
FicD sensitizes cellular response to glucose fluctuations in mouse embryonic fibroblasts.FicD 增强了小鼠胚胎成纤维细胞对葡萄糖波动的细胞反应。
Proc Natl Acad Sci U S A. 2024 Sep 17;121(38):e2400781121. doi: 10.1073/pnas.2400781121. Epub 2024 Sep 11.
5
Small molecule FICD inhibitors suppress endogenous and pathologic FICD-mediated protein AMPylation.小分子FICD抑制剂可抑制内源性和病理性FICD介导的蛋白质AMP化。
bioRxiv. 2024 Jul 16:2024.07.13.603377. doi: 10.1101/2024.07.13.603377.
6
Predictive Value and Immunological Role of the HSPA5 Gene in Cervical Cancer.HSPA5基因在宫颈癌中的预测价值及免疫作用
Biochem Genet. 2025 Apr;63(2):1566-1583. doi: 10.1007/s10528-024-10782-w. Epub 2024 Apr 8.
7
The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3.贝氏考克斯体 Fic 酶的 DNA 结合诱导(去)腺苷酸化活性靶向组蛋白 H3。
Commun Biol. 2023 Nov 6;6(1):1124. doi: 10.1038/s42003-023-05494-7.
8
Catalytic deAMPylation in AMPylation-inhibitory/assistant forms of FICD protein.FICD蛋白的腺苷酸化抑制/辅助形式中的催化去腺苷酸化作用
Front Chem. 2023 Jan 25;11:1077188. doi: 10.3389/fchem.2023.1077188. eCollection 2023.
9
Infancy-onset diabetes caused by de-regulated AMPylation of the human endoplasmic reticulum chaperone BiP.由人类内质网伴侣蛋白 BiP 的 AMPylation 失调引起的婴儿期发病型糖尿病。
EMBO Mol Med. 2023 Mar 8;15(3):e16491. doi: 10.15252/emmm.202216491. Epub 2023 Jan 27.
10
The Alarmone Diadenosine Tetraphosphate as a Cosubstrate for Protein AMPylation.作为蛋白 AMP 化反应辅助底物的双腺苷四磷酸警报素。
Angew Chem Int Ed Engl. 2023 Feb 13;62(8):e202213279. doi: 10.1002/anie.202213279. Epub 2023 Jan 16.
使用 LMNG 隐形载体的小角散射(SANS)表明 NADPH 氧化酶的域间灵活性。
Biophys J. 2020 Aug 4;119(3):605-618. doi: 10.1016/j.bpj.2020.06.025. Epub 2020 Jul 3.
4
AnAnaS: Software for Analytical Analysis of Symmetries in Protein Structures.AnAnaS:用于分析蛋白质结构中对称性的软件。
Methods Mol Biol. 2020;2165:245-257. doi: 10.1007/978-1-0716-0708-4_14.
5
Feedback regulation of heat shock factor 1 (Hsf1) activity by Hsp70-mediated trimer unzipping and dissociation from DNA.热休克因子 1(Hsf1)活性的反馈调节通过 Hsp70 介导的三聚体解旋和解离与 DNA。
EMBO J. 2020 Jul 15;39(14):e104096. doi: 10.15252/embj.2019104096. Epub 2020 Jun 3.
6
Predicting Protein Functional Motions: an Old Recipe with a New Twist.预测蛋白质功能运动:旧方新用。
Biophys J. 2020 May 19;118(10):2513-2525. doi: 10.1016/j.bpj.2020.03.020. Epub 2020 Apr 4.
7
Scaling diffraction data in the DIALS software package: algorithms and new approaches for multi-crystal scaling.DIALS 软件包中的衍射数据缩放:多晶体缩放的算法和新方法。
Acta Crystallogr D Struct Biol. 2020 Apr 1;76(Pt 4):385-399. doi: 10.1107/S2059798320003198. Epub 2020 Mar 31.
8
Unstructured regions in IRE1α specify BiP-mediated destabilisation of the luminal domain dimer and repression of the UPR.IRE1α 的无结构区域指定 BiP 介导的腔域二聚体的不稳定性和 UPR 的抑制。
Elife. 2019 Dec 24;8:e50793. doi: 10.7554/eLife.50793.
9
An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP.FICD 在 ER 酶中的寡聚状态依赖性开关调节 BiP 的 AMPylation 和去 AMPylation。
EMBO J. 2019 Oct 4;38(21):e102177. doi: 10.15252/embj.2019102177. Epub 2019 Sep 18.
10
A Ca-regulated deAMPylation switch in human and bacterial FIC proteins.钙离子调控的人源和细菌 FIC 蛋白去腺苷酸化开关。
Nat Commun. 2019 Mar 8;10(1):1142. doi: 10.1038/s41467-019-09023-1.