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药用植物(萝摩科)的完整叶绿体基因组序列

The complete chloroplast genome sequence of medicinal plant: (Asclepiadaceae).

作者信息

Kang Peng, Guo Yuqian, Zhang Yiyue, Wei Yuqing

机构信息

Key Laboratory of Ecological Protection of Agro-pastoral Ecotones in the Yellow River Basin of National Ethnic Affairs Commission of the People's Republic of China, College of Biological Science & Engineering, North Minzu University, Yinchuan, Ningxia, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2021 Aug 11;6(9):2592-2593. doi: 10.1080/23802359.2021.1961622. eCollection 2021.

DOI:10.1080/23802359.2021.1961622
PMID:34409153
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8366666/
Abstract

is a medicinal plant. The complete chloroplast genome sequence of is 158,547 bp in length, contains 131 complete genes, including 85 protein-coding genes (85 PCGs), 8 ribosomal RNA genes (8 rRNAs), and 37 tRNA genes (37 tRNAs). The overall AT content of cp DNA is 62.1%, the corresponding values of the LSC, SSC, and IR regions are 63.7, 67.7, and 56.5%. Phylogenetic tree shows that was identified as the most divergent among the sequenced species of used.

摘要

是一种药用植物。其完整的叶绿体基因组序列长度为158,547 bp,包含131个完整基因,包括85个蛋白质编码基因(85个PCG)、8个核糖体RNA基因(8个rRNA)和37个转运RNA基因(37个tRNA)。叶绿体DNA的总体AT含量为62.1%,LSC、SSC和IR区域的相应值分别为63.7%、67.7%和56.5%。系统发育树表明,在所使用的测序物种中,被确定为差异最大的。

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本文引用的文献

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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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Plann: A command-line application for annotating plastome sequences.Plann:一个用于注释质体基因组序列的命令行应用程序。
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
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