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唇形科(植物)的完整叶绿体基因组。

The complete chloroplast genome of (Labiatae).

作者信息

Li Junyi, Wang Dong, Xue Panpan, Sun Haoran, Feng Qiuhong, Miao Ning

机构信息

Sichuan Academy of Forestry/Ecological Restoration and Conservation on Forest and Wetland Key Laboratory of Sichuan Province, Chengdu, P. R. China.

Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 12;6(1):84-85. doi: 10.1080/23802359.2020.1847621.

DOI:10.1080/23802359.2020.1847621
PMID:33521276
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7808380/
Abstract

Fisch. ex Schrank Li is a traditional Chinese medicinal plant of genus from the Labiatae family. The complete chloroplast genome of was 152,336 bp in length, which contained 133 complete genes including 87 protein-coding genes (87 PCGs), 8 ribosomal RNA genes (8 rRNAs), and 37 transfer RNA genes (37 tRNAs). The GC content of chloroplast DNA was 38.3%. The corresponding values of the LSC, SSC, and IR regions were 36.3%, 32.5%, and 43.6%, respectively. Phylogenetic tree showed that the species from genus were divided into two monophyletic clades, and the divergence time of was earlier than that of the other species.

摘要

Fisch. ex Schrank Li是唇形科某属的一种传统中药材。其叶绿体基因组全长152,336 bp,包含133个完整基因,其中包括87个蛋白质编码基因(87个PCG)、8个核糖体RNA基因(8个rRNA)和37个转运RNA基因(37个tRNA)。叶绿体DNA的GC含量为38.3%。LSC、SSC和IR区域的相应值分别为36.3%、32.5%和43.6%。系统发育树显示,该属物种分为两个单系分支,且该物种的分化时间早于其他物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/12e4/7808380/9ca04db32c90/TMDN_A_1847621_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/12e4/7808380/9ca04db32c90/TMDN_A_1847621_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/12e4/7808380/9ca04db32c90/TMDN_A_1847621_F0001_B.jpg

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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
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