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新喀里多尼亚极度濒危物种的完整叶绿体基因组。 (注:原文中物种名缺失,翻译只能到此程度)

The complete chloroplast genome of , a Critically Endangered species in New Caledonia.

作者信息

Pang Jiaxin, Hu Wanlong, Wang Wentao, Li Jialiang, Mao Kangshan

机构信息

Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, People's Republic of China.

出版信息

Mitochondrial DNA B Resour. 2021 Aug 13;6(9):2648-2649. doi: 10.1080/23802359.2021.1964399. eCollection 2021.

DOI:10.1080/23802359.2021.1964399
PMID:34409167
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8366650/
Abstract

is a rare endemic conifer from New Caledonia, and it is evaluated as Critically Endangered in the IUCN Red List of Threatened Species. To take conservation actions more effectively, a survey of its genomic background and evolutionary status is of great significance. Illumina paired-end reads were used to character the chloroplast (cp) genome of . The circular genome is 122,068 bp in length, containing 115 genes, in which include 83 protein-coding genes, four ribosomal RNA genes, and 28 transfer RNA genes. Nine genes (F, C1, B, A, 2, B, 16, D, 12) have one intron, whilst one gene (3) has two introns. Inverted repeat (IR) sequence doesn't exist in the genome. The GC content of the cp genome is 34.1%. The phylogenetic analysis demonstrates that has a close relationship with .

摘要

是一种来自新喀里多尼亚的罕见特有针叶树,在世界自然保护联盟濒危物种红色名录中被评估为极度濒危。为了更有效地采取保护行动,对其基因组背景和进化状况进行调查具有重要意义。使用Illumina双端读数来表征的叶绿体(cp)基因组。环状基因组长度为122,068 bp,包含115个基因,其中包括83个蛋白质编码基因、4个核糖体RNA基因和28个转移RNA基因。9个基因(F、C1、B、A、2、B、16、D、12)有一个内含子,而一个基因(3)有两个内含子。基因组中不存在反向重复(IR)序列。cp基因组的GC含量为34.1%。系统发育分析表明与有密切关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c41/8366650/575adaffbfb8/TMDN_A_1964399_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c41/8366650/575adaffbfb8/TMDN_A_1964399_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c41/8366650/575adaffbfb8/TMDN_A_1964399_F0001_B.jpg

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