Ghanta Krishna Prasad, Mondal Souvik, Mondal Sandip, Bandyopadhyay Sanjoy
Molecular Modeling Laboratory, Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India.
J Phys Chem B. 2021 Aug 26;125(33):9441-9453. doi: 10.1021/acs.jpcb.1c04167. Epub 2021 Aug 16.
Ionic liquids (ILs), depending on their cation-anion combinations, are known to influence the conformational properties and activities of proteins in a nonuniform manner. To obtain microscopic understanding of such influence, it is important to characterize protein-IL interactions and explore the modified solvation environment around the protein. In this work, molecular dynamics (MD) simulations of the globular protein α-lactalbumin have been carried out in aqueous IL solutions containing 1-butyl-3-methylimidazolium cations (BMIM) in combination with a series of anions with varying degree of hydrophilicity, namely, hexafluorophosphate (PF), ethyl sulfate (ETS), acetate (OAc), chloride (Cl), dicyanamide (DCA), and nitrate (NO) . The calculations revealed that ILs with hydrophobic and hydrophilic anions have contrasting influence on conformational flexibility of the protein. It is further observed that the BMIM cations exhibit site-specific orientations at the interface depending on the hydrophilicity of the anion component. Most importantly, the results demonstrated enhanced propensity of hydrophilic ILs to replace relatively weaker protein-water hydrogen bonds by stronger protein-IL hydrogen bonds at the protein surface as compared to the hydrophobic ILs. Such breaking of protein-water hydrogen bonds at a greater extent leads to greater loss of water hydrating the protein in the presence of hydrophilic ILs, thereby reducing the protein's stability.
离子液体(ILs),取决于其阳离子 - 阴离子组合,已知会以非均匀方式影响蛋白质的构象性质和活性。为了从微观角度理解这种影响,表征蛋白质 - IL相互作用并探索蛋白质周围改性的溶剂化环境非常重要。在这项工作中,对球状蛋白质α - 乳白蛋白进行了分子动力学(MD)模拟,模拟是在含有1 - 丁基 - 3 - 甲基咪唑阳离子(BMIM)与一系列具有不同亲水性的阴离子(即六氟磷酸盐(PF)、硫酸乙酯(ETS)、乙酸盐(OAc)、氯化物(Cl)、双氰胺(DCA)和硝酸盐(NO))的水性IL溶液中进行的。计算结果表明,具有疏水阴离子和亲水阴离子的离子液体对蛋白质的构象灵活性有相反的影响。进一步观察到,BMIM阳离子在界面处表现出特定位置的取向,这取决于阴离子组分的亲水性。最重要的是,结果表明,与疏水性离子液体相比,亲水性离子液体更倾向于在蛋白质表面用更强的蛋白质 - IL氢键取代相对较弱的蛋白质 - 水氢键。在亲水性离子液体存在下,蛋白质 - 水氢键的这种更大程度的断裂导致更多使蛋白质水合的水流失,从而降低了蛋白质的稳定性。