Institute of Chemistry and Center for Computing in Engineering & Science, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-872, SP, Brazil.
J Phys Chem B. 2024 Aug 15;128(32):7792-7802. doi: 10.1021/acs.jpcb.4c03735. Epub 2024 Aug 2.
The present study utilizes molecular dynamics simulations to examine how different anions compete for protein solvation in aqueous solutions of ionic liquids (ILs). Ubiquitin is used as model protein and studied in IL mixtures sharing the same cation, 1-ethyl-3-methylimidazolium (EMIM), and two different anions in the same solution, from combinations of dicyanamide (DCA), chloride (Cl), nitrate (NO), and tetrafluoroborate (BF). Our findings reveal that specific interactions between anions and the protein are paramount in IL solvation, but that combinations of anions are not additive. For example, DCA exhibits a remarkable ability to form hydrogen bonds with the protein, resulting in a significantly stronger preferential binding to the protein than other anions. However, the combination of DCA with NO, which also forms hydrogen bonds with the protein, results in a smaller preferential solvation of the protein than the combination of DCA with chloride ions, which are weaker binders. Thus, combining anions with varying affinities for the protein surface modulates the overall ion accumulation through nonadditive mechanisms, highlighting the importance of the understanding of competition for specific interaction sites, cooperative binding, bulk-solution affinity, and overall charge compensations, on the overall solvation capacity of the solution. Such knowledge may allow for the design of novel IL-based processes in biotechnology and material science, where fine-tuning protein solvation is crucial for optimizing performance and functionality.
本研究利用分子动力学模拟研究了不同阴离子在离子液体(ILs)水溶液中竞争蛋白质溶剂化的情况。采用泛素作为模型蛋白,在相同阳离子(1-乙基-3-甲基咪唑鎓(EMIM))和相同溶液中两种不同阴离子(双氰胺(DCA)、氯(Cl)、硝酸盐(NO)和四氟硼酸盐(BF))的 IL 混合物中进行研究。我们的研究结果表明,阴离子与蛋白质之间的特定相互作用对于 IL 溶剂化至关重要,但阴离子的组合并非加和性的。例如,DCA 与蛋白质形成氢键的能力显著,与其他阴离子相比,其对蛋白质的优先结合更强。然而,DCA 与 NO 的组合,尽管也与蛋白质形成氢键,其对蛋白质的优先溶剂化作用却小于 DCA 与氯离子的组合,因为氯离子的结合较弱。因此,通过非加和机制,用对蛋白质表面具有不同亲和力的阴离子组合来调节整体离子积累,突出了理解特定相互作用位点的竞争、协同结合、体相溶液亲和力和整体电荷补偿对溶液整体溶剂化能力的重要性。这种知识可能允许在生物技术和材料科学中设计新的基于 IL 的工艺,其中精细调整蛋白质溶剂化对于优化性能和功能至关重要。