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使用KNIME中的工作流程自动测量斑马鱼胚胎的自发尾卷曲,作为一种敏感的行为终点。

Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME.

作者信息

Ogungbemi Afolarin O, Teixido Elisabet, Massei Riccardo, Scholz Stefan, Küster Eberhard

机构信息

Department of Bioanalytical Ecotoxicology, Helmholtz Centre for Environmental Research-UFZ, Permoserstraße 15, Leipzig 04318, Germany.

Institute for Environmental Sciences, University of Koblenz-Landau, 76829, Fortstraße 7, Landau, Germany.

出版信息

MethodsX. 2021 Apr 4;8:101330. doi: 10.1016/j.mex.2021.101330. eCollection 2021.

Abstract

Neuroactive substances are the largest group of chemicals detected in European surface waters. Mixtures of neuroactive substances occurring at low concentrations can induce adverse neurological effects in humans and organisms in the environment. Therefore, there is a need to develop new screening tools to detect these chemicals. Measurement of behavior or motor effects in rodents and fish are usually performed to assess potential neurotoxicity for risk assessment. However, due to pain and stress inflicted on these animals, the scientific community is advocating for new alternative methods based on the 3R principle (reduce, replace and refine). As a result, the behavior measurement of early stages of zebrafish embryos such as locomotor response, photomotor response and spontaneous tail coiling are considered as a valid alternative to adult animal testing. In this study, we developed a workflow to investigate the spontaneous tail coiling (STC) of zebrafish embryos and to accurately measure the STC effect in the KNIME software. We validated the STC protocol with 3 substances (abamectin, chlorpyrifos-oxon and pyracostrobin) which have different mechanisms of action. The KNIME workflow combined with easy and cost-effective method of video acquisition makes this STC protocol a valuable method for neurotoxicity testing.•Video acquisition duration of 60 s at 25 ± 1 hpf was used•20 embryos exposed per dish and acclimatized for 30 min before video acquisition•Capability to inspect and correct errors for high accuracy.

摘要

神经活性物质是在欧洲地表水中检测到的最大一类化学物质。低浓度存在的神经活性物质混合物可对人类和环境中的生物体产生不良神经影响。因此,需要开发新的筛选工具来检测这些化学物质。通常通过测量啮齿动物和鱼类的行为或运动效应来评估潜在的神经毒性以进行风险评估。然而,由于对这些动物造成的疼痛和压力,科学界提倡基于3R原则(减少、替代和优化)的新替代方法。因此,斑马鱼胚胎早期阶段的行为测量,如运动反应、光运动反应和自发尾卷曲,被认为是成年动物测试的有效替代方法。在本研究中,我们开发了一种工作流程来研究斑马鱼胚胎的自发尾卷曲(STC),并在KNIME软件中准确测量STC效应。我们用3种具有不同作用机制的物质(阿维菌素、毒死蜱氧磷和吡唑醚菌酯)验证了STC方案。KNIME工作流程与简单且经济高效的视频采集方法相结合,使这种STC方案成为神经毒性测试的一种有价值的方法。

• 在25 ± 1 hpf时使用60秒的视频采集时长

• 每盘暴露20个胚胎,在视频采集前适应30分钟

• 具备检查和纠正错误以实现高精度的能力。

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