盒状嗜盐古菌中华盐盒菌ATCC 33800的全基因组和甲基化组分析
Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800.
作者信息
Fomenkov Alexey, DasSarma Priya, Kennedy Sean P, Roberts Richard J, DasSarma Shiladitya
机构信息
Research Department, New England BioLabs, Ipswich, Massachusetts, USA.
Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
出版信息
Microbiol Resour Announc. 2021 Aug 26;10(34):e0061921. doi: 10.1128/MRA.00619-21.
Abstract
The genome of halophilic archaeon Haloarcula sinaiiensis ATCC 33800 was sequenced and assembled and comprises seven replicons. Four m6A and one m4C modified motifs and their responsible methyltransferase genes have been identified in the genome by single-molecule real-time (SMRT) sequencing and bioinformatic analysis.
摘要
对嗜盐古菌中华盐盒菌（Haloarcula sinaiiensis）ATCC 33800的基因组进行了测序和组装，其基因组由七个复制子组成。通过单分子实时（SMRT）测序和生物信息学分析，在该基因组中鉴定出了四个N6-甲基腺苷（m6A）和一个N4-甲基胞嘧啶（m4C）修饰基序及其相应的甲基转移酶基因。
相似文献
1
Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800.盒状嗜盐古菌中华盐盒菌ATCC 33800的全基因组和甲基化组分析
Microbiol Resour Announc. 2021 Aug 26;10(34):e0061921. doi: 10.1128/MRA.00619-21.
2
Study of the whole genome, methylome and transcriptome of Cordyceps militaris.蛹虫草全基因组、甲基化组和转录组研究。
Sci Rep. 2019 Jan 29;9(1):898. doi: 10.1038/s41598-018-38021-4.
3
Complete Genome Sequence of the Extremely Halophilic Archaeon Haloarcula hispanica Strain N601.嗜盐古菌西班牙嗜盐嗜盐菌菌株N601的全基因组序列
Genome Announc. 2014 Mar 13;2(2):e00178-14. doi: 10.1128/genomeA.00178-14.
4
Characterization of a family IV esterase from extremely halophilic archaeon Haloarcula japonica.来自极端嗜盐古菌日本嗜盐嗜碱菌的IV型酯酶的特性分析。
Extremophiles. 2024 Dec 3;29(1):7. doi: 10.1007/s00792-024-01370-2.
5
Complete biosynthetic pathway of the C50 carotenoid bacterioruberin from lycopene in the extremely halophilic archaeon Haloarcula japonica.嗜盐古菌日本嗜盐碱球菌中从番茄红素合成C50类胡萝卜素细菌红素的完整生物合成途径。
J Bacteriol. 2015 May;197(9):1614-23. doi: 10.1128/JB.02523-14. Epub 2015 Feb 23.
6
Molecular cloning of transducer genes hjtA and hjtC from extremely halophilic archaeon Haloarcula japonica.从极端嗜盐古菌日本嗜盐栖热菌中克隆转导基因hjtA和hjtC
Nucleic Acids Symp Ser (Oxf). 2004(48):169-70. doi: 10.1093/nass/48.1.169.
7
Characterization of a GlgC homolog from extremely halophilic archaeon Haloarcula japonica.极端嗜盐古菌日本盐杆菌 GlgC 同源蛋白的特性研究。
Biosci Biotechnol Biochem. 2021 May 25;85(6):1441-1447. doi: 10.1093/bbb/zbab050.
8
Cloning and sequencing of ftsZ homolog from extremely halophilic archaeon Haloarcula japonica strain TR-1.嗜盐古菌日本嗜盐碱杆菌TR-1株ftsZ同源物的克隆与测序
Nucleic Acids Symp Ser. 2000(44):155-6. doi: 10.1093/nass/44.1.155.
9
Gene cloning of ftsZ1 homolog from extremely halophilic archaeon Haloarcula japonica.来自极端嗜盐古菌日本嗜盐碱杆菌ftsZ1同源物的基因克隆。
Nucleic Acids Res Suppl. 2003(3):313-4. doi: 10.1093/nass/3.1.313.
引用本文的文献
1
Genome Sequence of the Early 20th-Century Extreme Halophile sp. Strain NRC-34001.20世纪早期极端嗜盐菌sp.菌株NRC - 34001的基因组序列
Microbiol Resour Announc. 2022 Jan 20;11(1):e0118121. doi: 10.1128/mra.01181-21. Epub 2022 Jan 13.
2
Genome Sequence of sp. Strain BOL4-2, Isolated and Cultured from Salar de Uyuni, Bolivia.从玻利维亚乌尤尼盐沼分离培养的[物种名称]菌株BOL4-2的基因组序列
Microbiol Resour Announc. 2021 Dec 2;10(48):e0104521. doi: 10.1128/MRA.01045-21.
本文引用的文献
1
Complete Genome Sequences and Methylome Analysis of Two Environmental .两个环境样本的全基因组序列和甲基化组分析
Microbiol Resour Announc. 2020 Apr 9;9(15):e00236-20. doi: 10.1128/MRA.00236-20.
2
RefSeq: an update on prokaryotic genome annotation and curation.RefSeq：原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
3
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Halophiles and their enzymes: negativity put to good use.嗜盐菌及其酶：变消极为有用之处。
Curr Opin Microbiol. 2015 Jun;25:120-6. doi: 10.1016/j.mib.2015.05.009. Epub 2015 Jun 9.
5
REBASE--a database for DNA restriction and modification: enzymes, genes and genomes.REBASE——一个关于DNA限制与修饰的数据库：酶、基因与基因组。
Nucleic Acids Res. 2015 Jan;43(Database issue):D298-9. doi: 10.1093/nar/gku1046. Epub 2014 Nov 5.
6
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
7
The methylomes of six bacteria.六种细菌的甲基组图谱。
Nucleic Acids Res. 2012 Dec;40(22):11450-62. doi: 10.1093/nar/gks891. Epub 2012 Oct 2.
8
Going beyond five bases in DNA sequencing.超越 DNA 测序的五个碱基。
Curr Opin Struct Biol. 2012 Jun;22(3):251-61. doi: 10.1016/j.sbi.2012.04.002. Epub 2012 May 9.
9
Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing.利用单分子实时 DNA 测序技术对 DNA 甲基转移酶特异性进行表征。
Nucleic Acids Res. 2012 Feb;40(4):e29. doi: 10.1093/nar/gkr1146. Epub 2011 Dec 7.
10
Direct detection of DNA methylation during single-molecule, real-time sequencing.单分子实时测序中 DNA 甲基化的直接检测。
Nat Methods. 2010 Jun;7(6):461-5. doi: 10.1038/nmeth.1459. Epub 2010 May 9.
Zotero 插件