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紫外线照射诱导的皮肤损伤中tRFs和tiRNAs的差异表达谱及功能预测

Differential Expression Profiles and Function Predictions for tRFs & tiRNAs in Skin Injury Induced by Ultraviolet Irradiation.

作者信息

Fang Yuan, Liu Yang, Yan Yu, Shen Yiyu, Li Zenan, Li Xu, Zhang Yufang, Xue Zhigang, Peng Cong, Chen Xiang, Cao Ke, Zhou Jianda

机构信息

Department of Plastic Surgery, The Third Xiangya Hospital, Central South University, Changsha, China.

Department of Nephrology, The Second Xiangya Hospital, Central South University, Changsha, China.

出版信息

Front Cell Dev Biol. 2021 Aug 10;9:707572. doi: 10.3389/fcell.2021.707572. eCollection 2021.

Abstract

Ultraviolet (UV) radiation is a major environmental factor contributing skin damage. As UV exposure is inevitable, it is necessary to pay attention to the underlying molecular mechanisms of UV-induced skin damage to develop effective therapies. tRNA-derived stress-induced RNAs (tiRNAs) and tRNA-derived fragments (tRFs) are tRNA-derived small RNAs (tsRNAs) that are a novel class of short, non-coding RNAs. However, the functions behind tRFs & tiRNAs in UV-induced skin injury are not yet clear. Firstly, the animal model of ultraviolet irradiation induced skin damage was established. Then the skin samples were preserved for the follow-up experiment. Sequencing was used to screen expression profiles and predict target genes. Compared with normal skin, a total of 31 differentially expressed tRFs & tiRNAs were screened. Among these, 10 tRFs & tiRNAs were shown to be significantly different in expression levels, where there were 4 up-regulated and 6 down-regulated target genes. Bioinformatics analyses revealed potential up-regulated tsRNAs (tRF-Val-AAC-012, tRF-Pro-AGG-012, tRF-Val-CAC-018, tRF-Val-AAC-031) and down-regulated tsRNAs (tRF-Arg-CCT-002, tRF-Trp-TCA-001, tiRNA-Ser-GCT-001, tRF-Gly-CCC-019, tRF-Ala-TGC-001, tRF-Ala-TGC-002). In summary, it was speculated that tRF-Gly-CCC-019 plays an important role in acute skin injury induced by UVB radiation by regulating the ras-related C3 botulinum toxin substrate 1 (Rac1) gene in the WNT signaling pathway. This study provides new insights into the mechanisms and therapeutic targets of UV-induced skin injury.

摘要

紫外线(UV)辐射是导致皮肤损伤的主要环境因素。由于不可避免会接触紫外线,因此有必要关注紫外线诱导皮肤损伤的潜在分子机制,以开发有效的治疗方法。tRNA衍生的应激诱导RNA(tiRNA)和tRNA衍生片段(tRF)是tRNA衍生的小RNA(tsRNA),属于一类新型的短链非编码RNA。然而,tRF和tiRNA在紫外线诱导的皮肤损伤中的功能尚不清楚。首先,建立了紫外线照射诱导皮肤损伤的动物模型。然后保存皮肤样本用于后续实验。通过测序筛选表达谱并预测靶基因。与正常皮肤相比,共筛选出31种差异表达的tRF和tiRNA。其中,10种tRF和tiRNA的表达水平存在显著差异,上调的靶基因有4个,下调的靶基因有6个。生物信息学分析揭示了潜在的上调tsRNA(tRF-Val-AAC-012、tRF-Pro-AGG-012、tRF-Val-CAC-018、tRF-Val-AAC-031)和下调tsRNA(tRF-Arg-CCT-002、tRF-Trp-TCA-001、tiRNA-Ser-GCT-001、tRF-Gly-CCC-019、tRF-Ala-TGC-001、tRF-Ala-TGC-002)。综上所述,推测tRF-Gly-CCC-019通过调节WNT信号通路中的ras相关C3肉毒杆菌毒素底物1(Rac1)基因,在UVB辐射诱导的急性皮肤损伤中起重要作用。本研究为紫外线诱导皮肤损伤的机制和治疗靶点提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d46/8383935/7eb041bc372b/fcell-09-707572-g001.jpg

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