Department of Integrative Biology, University of California, Berkeley, California, USA.
Department of Plant & Microbial Biology, University of California, Berkeley, California, USA.
Genome Biol Evol. 2021 Sep 1;13(9). doi: 10.1093/gbe/evab202.
A growing body of evidence has underscored the role of horizontal gene transfer (HGT) in animal evolution. Previously, we discovered the horizontal transfer of the gene encoding the eukaryotic genotoxin cytolethal distending toxin B (cdtB) from the pea aphid Acyrthosiphon pisum secondary endosymbiont (APSE) phages to drosophilid and aphid nuclear genomes. Here, we report cdtB in the nuclear genome of the gall-forming "swede midge" Contarinia nasturtii (Diptera: Cecidomyiidae) via HGT. We searched all available gall midge genome sequences for evidence of APSE-to-insect HGT events and found five toxin genes (aip56, cdtB, lysozyme, rhs, and sltxB) transferred horizontally to cecidomyiid nuclear genomes. Surprisingly, phylogenetic analyses of HGT candidates indicated APSE phages were often not the ancestral donor lineage of the toxin gene to cecidomyiids. We used a phylogenetic signal statistic to test a transfer-by-proximity hypothesis for animal HGT, which suggested that microbe-to-insect HGT was more likely between taxa that share environments than those from different environments. Many of the toxins we found in midge genomes target eukaryotic cells, and catalytic residues important for toxin function are conserved in insect copies. This class of horizontally transferred, eukaryotic cell-targeting genes is potentially important in insect adaptation.
越来越多的证据强调了水平基因转移(HGT)在动物进化中的作用。此前,我们发现豌豆蚜次级内共生体(APSE)噬菌体编码真核基因毒素细胞致死扩张毒素 B(cdtB)的基因从豌豆蚜中水平转移到果蝇和蚜虫的核基因组。在这里,我们通过 HGT 报道了在产瘿的“芜菁潜叶蝇”Contarinia nasturtii(双翅目:瘿蚊科)的核基因组中存在 cdtB。我们搜索了所有可用的瘿蚊基因组序列,以寻找 APSE 到昆虫 HGT 事件的证据,发现了五个毒素基因(aip56、cdtB、溶菌酶、rhs 和 sltxB)水平转移到瘿蚊核基因组。令人惊讶的是,对 HGT 候选基因的系统发育分析表明,APSE 噬菌体通常不是毒素基因向瘿蚊的祖先供体谱系。我们使用系统发育信号统计来检验动物 HGT 的近距离转移假说,该假说表明,微生物到昆虫的 HGT 更可能发生在共享环境的分类群之间,而不是发生在不同环境的分类群之间。我们在瘿蚊基因组中发现的许多毒素针对真核细胞,并且对毒素功能很重要的催化残基在昆虫拷贝中保守。这种水平转移的、针对真核细胞的基因类可能在昆虫适应中很重要。