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使用主成分分析在中尺度模拟中进行形态识别和分类的特征结构知识

Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis.

作者信息

Chiangraeng Natthiti, Armstrong Michael, Manokruang Kiattikhun, Lee Vannajan Sanghiran, Jiranusornkul Supat, Nimmanpipug Piyarat

机构信息

Department of Chemistry, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.

Department of Chemistry, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia.

出版信息

Polymers (Basel). 2021 Aug 4;13(16):2581. doi: 10.3390/polym13162581.

Abstract

Meso-scale simulations have been widely used to probe aggregation caused by structural formation in macromolecular systems. However, the limitations of the long-length scale, resulting from its simulation box, cause difficulties in terms of morphological identification and insufficient classification. In this study, structural knowledge derived from meso-scale simulations based on parameters from atomistic simulations were analyzed in dissipative particle dynamic (DPD) simulations of PS--PI diblock copolymers. The radial distribution function and its Fourier-space counterpart or structure factor were proposed using principal component analysis (PCA) as key characteristics for morphological identification and classification. Disorder, discrete clusters, hexagonally packed cylinders, connected clusters, defected lamellae, lamellae and connected cylinders were effectively grouped.

摘要

介观尺度模拟已被广泛用于探究大分子系统中结构形成所导致的聚集现象。然而,由于其模拟盒导致的长长度尺度限制,在形态识别和分类不足方面造成了困难。在本研究中,基于原子模拟参数的介观尺度模拟所获得的结构知识,在聚苯乙烯-聚异戊二烯(PS-PI)二嵌段共聚物的耗散粒子动力学(DPD)模拟中进行了分析。利用主成分分析(PCA)提出了径向分布函数及其傅里叶空间对应物或结构因子,作为形态识别和分类的关键特征。无序、离散簇、六方堆积圆柱、连接簇、有缺陷的片层、片层和连接圆柱被有效地分组。

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