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全外显子组和转录组测序揭示了转移性结直肠癌肿瘤中的克隆进化并呈现出免疫相关特征。

Whole exome and transcriptome sequencing reveal clonal evolution and exhibit immune-related features in metastatic colorectal tumors.

作者信息

Li Chunxue, Xu Juan, Wang Xiangfeng, Zhang Chao, Yu Zicheng, Liu Jiucheng, Tai Zaixian, Luo Ziwen, Yi Xin, Zhong Zhaoyang

机构信息

Department of general surgery, Daping Hospital, Army Medical University (Third Military Medical University), No.10 Changjiang Zhilu, Daping Yuzhong District, 400038, Chongqing, P.R. China.

Geneplus Shenzhen, 14 Zhongxing Road, Kengzi Street, Pingshan District, Shenzhen, P.R. China.

出版信息

Cell Death Discov. 2021 Aug 27;7(1):222. doi: 10.1038/s41420-021-00607-9.

DOI:10.1038/s41420-021-00607-9
PMID:34453042
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8397721/
Abstract

Liver is the most common site where metastatic lesions of colorectal cancer (CRC) arise. Although researches have shown mutations in driver genes, copy number variations (CNV) and alterations in relevant signaling pathways promoted the tumor evolution and immune escape during colorectal liver metastasis (CLM), the underlying mechanism remains largely elusive. Tumor and matched metastatic tissues were collected from 16 patients diagnosed with colorectal cancer and subjected to whole-exome sequencing (WES) and RNA sequencing (RNA-seq) for studying colorectal cancer clonal evolution and immune escape during CLM. Shared somatic mutations between primary and metastatic tissues with a commonly observed subclonal-clonal (S-C) changing pattern indicated a common clonal origin between two lesions. The recurrent mutations with S-C changing pattern included those in KRAS, SYNE1, CACNA1H, PCLO, FBXL2, and DNAH11. The main CNV events underwent clonal-clonal evolution (20q amplification (amp), 17p deletion (del), 18q del and 8p del), subclonal-clonal evolution (8q amp, 13q amp, 8p del) and metastasis-specific evolution (8q amp) during the process of CLM. In addition, we revealed a potential mechanism of tumor cell immune escape by analyzing human leukocytes antigens (HLA) related clonal neoantigens and immune cell components in CLM. Our study proposed a novel liver metastasis-related evolutionary process in colorectal cancer and emphasized the theory of neo-immune escape in colorectal liver metastasis.

摘要

肝脏是结直肠癌(CRC)转移灶最常见的发生部位。尽管研究表明,驱动基因的突变、拷贝数变异(CNV)以及相关信号通路的改变促进了结直肠癌肝转移(CLM)过程中的肿瘤进化和免疫逃逸,但其潜在机制仍 largely 难以捉摸。从 16 例诊断为结直肠癌的患者中收集肿瘤及配对的转移组织,进行全外显子组测序(WES)和 RNA 测序(RNA-seq),以研究 CLM 过程中的结直肠癌克隆进化和免疫逃逸。原发组织和转移组织之间具有常见亚克隆 - 克隆(S - C)变化模式的共享体细胞突变表明两个病灶具有共同的克隆起源。具有 S - C 变化模式的复发性突变包括 KRAS、SYNE1、CACNA1H、PCLO、FBXL2 和 DNAH11 中的突变。主要的 CNV 事件在 CLM 过程中经历了克隆 - 克隆进化(20q 扩增(amp)、17p 缺失(del)、18q del 和 8p del)、亚克隆 - 克隆进化(8q amp、13q amp、8p del)和转移特异性进化(8q amp)。此外,我们通过分析 CLM 中人类白细胞抗原(HLA)相关的克隆新抗原和免疫细胞成分,揭示了肿瘤细胞免疫逃逸的潜在机制。我们的研究提出了结直肠癌中一种新的肝转移相关进化过程,并强调了结直肠癌肝转移中的新免疫逃逸理论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/b56f31e02d8e/41420_2021_607_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/85760873d619/41420_2021_607_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/afdd62d4d848/41420_2021_607_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/9de9ce2ba28a/41420_2021_607_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/876a032df76c/41420_2021_607_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/42265e167b7f/41420_2021_607_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/b56f31e02d8e/41420_2021_607_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/85760873d619/41420_2021_607_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/afdd62d4d848/41420_2021_607_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/9de9ce2ba28a/41420_2021_607_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/876a032df76c/41420_2021_607_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/42265e167b7f/41420_2021_607_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed50/8397721/b56f31e02d8e/41420_2021_607_Fig6_HTML.jpg

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