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与急性软组织损伤相关的循环外泌体微小RNA谱

Circulating Exosomal MicroRNA Profiles Associated with Acute Soft Tissue Injury.

作者信息

Yang Hongchang, Zhou Jing, Wang Junlei, Zhang Luoning, Liu Quzhi, Luo Jing, Jia Hongyan, Liu Li, Zhou Qiang

机构信息

Physical Education Department, Hohai University, Nanjing, Jiangsu, China.

Department of Clinical Medicine, Jiangsu Health Vocational College, Nanjing, Jiangsu, China.

出版信息

Cell J. 2021 Sep;23(4):474-484. doi: 10.22074/cellj.2021.7275. Epub 2021 Aug 29.

Abstract

OBJECTIVE

This study aimed to characterize the circulating exosomal microRNA (miRNA) profiles associated with acute soft tissue injury.

MATERIALS AND METHODS

In this experimental study, a total of 12 rats were randomly divided into control group and model group (n=6 for each group). The rats in the model group were used to establish an acute soft tissue injury following the mechanical injury of the leg. The exosomes from the peripheral blood of all the rats were isolated and then characterized by Nanosight NS300 particle size analyser (NTA), transmission electron microscopy (TEM) and western blot. Next, the exosomal miRNAs in the control and model groups were sequenced, and the differentially expressed miRNAs (DE-miRNAs) were identified using the DESeq algorithm. Functional analyses were performed using Gene Ontology (GO) terms and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway databases. Finally, quantitative reverse-transcription polymersa chain reaction (qRT-PCR) was used to verify the expression of the DE-miRNAs.

RESULTS

TEM, NTA and western blot results showed that the exosomes were approximately 100 nm in size and exhibited cup-shaped morphology. A total of 628 miRNAs were obtained by sequencing. After that, 28 DE miRNAs (DEmiRNAs) were identified, including seven down-regulated miRNAs and 21 up-regulated miRNAs. These DE-miRNAs were linked to 7539 target genes with GO. Also, KEGG analyses demonstrated that these genes were enriched for phosphorylation, VEGF signaling pathway, and MAPK signaling pathway. Additionally, the consistency rate between the qRT-PCR and sequencing results was 83.33%, which showed a high relative reliability of the sequencing results.

CONCLUSION

These findings suggest that these 28 exosomal miRNAs may be involved in the regulation of acute soft tissue injury, by one of critical biological processes (BP), phosphorylation. The findings provide valuable clues by utilizing exosomes as therapeutic targets for the effective treatment of acute soft tissue injury.

摘要

目的

本研究旨在表征与急性软组织损伤相关的循环外泌体微小RNA(miRNA)谱。

材料与方法

在本实验研究中,将12只大鼠随机分为对照组和模型组(每组n = 6)。模型组大鼠通过腿部机械损伤建立急性软组织损伤模型。分离所有大鼠外周血中的外泌体,然后用纳米可视NS300粒度分析仪(NTA)、透射电子显微镜(TEM)和蛋白质免疫印迹法进行表征。接下来,对对照组和模型组的外泌体miRNA进行测序,并使用DESeq算法鉴定差异表达的miRNA(DE-miRNA)。使用基因本体论(GO)术语和京都基因与基因组百科全书(KEGG)通路数据库进行功能分析。最后,采用定量逆转录聚合酶链反应(qRT-PCR)验证DE-miRNA的表达。

结果

TEM、NTA和蛋白质免疫印迹结果显示,外泌体大小约为100 nm,呈杯状形态。测序共获得62​​8个miRNA。之后,鉴定出28个DE miRNA,包括7个下调的miRNA和21个上调的miRNA。这些DE-miRNA通过GO与7539个靶基因相关联。此外,KEGG分析表明,这些基因在磷酸化、VEGF信号通路和MAPK信号通路中富集。此外,qRT-PCR与测序结果的一致性率为83.33%,表明测序结果具有较高的相对可靠性。

结论

这些发现表明,这28种外泌体miRNA可能通过关键生物学过程之一——磷酸化参与急性软组织损伤的调节。这些发现通过将外泌体用作有效治疗急性软组织损伤的治疗靶点提供了有价值的线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4f/8405084/b28679d4f64f/Cell-J-23-474-g01.jpg

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