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NEDD4家族的综合生物信息学分析揭示了其在透明细胞肾细胞癌中的预后价值。

Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of in clear-cell renal cell cancer.

作者信息

Zhao Hui, Zhang Junjun, Fu Xiaoliang, Mao Dongdong, Qi Xuesen, Liang Shuai, Meng Gang, Song Zewen, Yang Ru, Guo Zhenni, Tong Binghua, Sun Meiqing, Zuo Baile, Li Guoyin

机构信息

Department of Urology, Affiliated Hospital of Weifang Medical University, Weifang, China.

Department of Urology, China Rehabilitation Research Centre, Rehabilitation School of Capital Medical University, Beijing, China.

出版信息

PeerJ. 2021 Aug 17;9:e11880. doi: 10.7717/peerj.11880. eCollection 2021.

Abstract

The members of the Nedd4-like E3 family participate in various biological processes. However, their role in clear cell renal cell carcinoma (ccRCC) is not clear. This study systematically analyzed the Nedd4-like E3 family members in ccRCC data sets from multiple publicly available databases. NEDD4L was identified as the only NEDD4 family member differentially expressed in ccRCC compared with normal samples. Bioinformatics tools were used to characterize the function of NEDD4L in ccRCC. It indicated that NEDD4L might regulate cellular energy metabolism by co-expression analysis, and subsequent gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. A prognostic model developed by the LASSO Cox regression method showed a relatively good predictive value in training and testing data sets. The result revealed that NEDD4L was associated with biosynthesis and metabolism of ccRCC. Since NEDD4L is downregulated and dysregulation of metabolism is involved in tumor progression, NEDD4L might be a potential therapeutic target in ccRCC.

摘要

Nedd4样E3家族成员参与多种生物学过程。然而,它们在肾透明细胞癌(ccRCC)中的作用尚不清楚。本研究系统分析了来自多个公开数据库的ccRCC数据集中的Nedd4样E3家族成员。与正常样本相比,NEDD4L被确定为ccRCC中唯一差异表达的NEDD4家族成员。利用生物信息学工具对NEDD4L在ccRCC中的功能进行了表征。通过共表达分析以及随后的基因本体(GO)和京都基因与基因组百科全书(KEGG)分析表明,NEDD4L可能调节细胞能量代谢。通过LASSO Cox回归方法建立的预后模型在训练和测试数据集中显示出相对较好的预测价值。结果表明,NEDD4L与ccRCC的生物合成和代谢相关。由于NEDD4L表达下调且代谢失调与肿瘤进展有关,NEDD4L可能是ccRCC的一个潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94f4/8378337/549952cb766f/peerj-09-11880-g001.jpg

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