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从非球型赝原子模型计算静电势、电场和电场梯度。二、无限晶体中性质的评估。

On the calculation of the electrostatic potential, electric field and electric field gradient from the aspherical pseudoatom model. II. Evaluation of the properties in an infinite crystal.

机构信息

Department of Chemistry and Computational Science Program, Middle Tennessee State University, Murfreesboro, TN 37132, USA.

Department of Chemistry, Materials and Chemical Engineering, Politecnico di Milano, Via Mancinelli 7, Milano, 20131, Italy.

出版信息

Acta Crystallogr A Found Adv. 2021 Sep 1;77(Pt 5):399-419. doi: 10.1107/S2053273321005532. Epub 2021 Jul 29.

Abstract

The previously reported exact potential and multipole moment (EP/MM) method for fast and precise evaluation of the intermolecular electrostatic interaction energies in molecular crystals using the pseudoatom representation of the electron density [Nguyen, Macchi & Volkov (2020), Acta Cryst. A76, 630-651] has been extended to the calculation of the electrostatic potential (ESP), electric field (EF) and electric field gradient (EFG) in an infinite crystal. The presented approach combines an efficient Ewald-type summation (ES) of atomic multipoles up to the hexadecapolar level in direct and reciprocal spaces with corrections for (i) the net polarization of the sample (the `surface term') due to a net dipole moment of the crystallographic unit cell (if present) and (ii) the short-range electron-density penetration effects. The rederived and reported closed-form expressions for all terms in the ES algorithm have been augmented by the expressions for the surface term available in the literature [Stenhammar, Trulsson & Linse (2011), J. Chem. Phys. 134, 224104] and the exact potential expressions reported in a previous study [Volkov, King, Coppens & Farrugia (2006), Acta Cryst. A62, 400-408]. The resulting algorithm, coded using Fortran in the XDPROP module of the software package XD, was tested on several small molecular crystal systems (formamide, benzene, L-dopa, paracetamol, amino acids etc.) and compared with a series of EP/MM-based direct-space summations (DS) performed within a certain number of unit cells generated along both the positive and negative crystallographic directions. The EP/MM-based ES technique allows for a noticeably more precise determination of the EF and EFG and significantly better precision of the evaluated ESP when compared with the DS calculations, even when the latter include contributions from an array of symmetry-equivalent atoms generated within four additional unit cells along each crystallographic direction. In terms of computational performance, the ES/EP/MM method is significantly faster than the DS calculations performed within the extended unit-cell limits but trails the DS calculations within the reduced summation ranges. Nonetheless, the described EP/MM-based ES algorithm is superior to the direct-space summations as it does not require the user to monitor continuously the convergence of the evaluated properties as a function of the summation limits and offers a better precision-performance balance.

摘要

先前报道的精确势能和多极矩(EP/MM)方法[Nguyen、Macchi 和 Volkov(2020), Acta Cryst. A76,630-651],用于使用电子密度的伪原子表示快速准确地评估分子晶体中的分子间静电相互作用能,已扩展到无限晶体中静电势(ESP)、电场(EF)和电场梯度(EFG)的计算。所提出的方法结合了原子多极子在直接和倒易空间中的高效艾瓦尔德型求和(ES),直到十六极水平,并对以下因素进行了修正:(i)由于晶胞(如果存在)的净偶极矩引起的样品净极化(“表面项”);(ii)电子密度短程穿透效应。在 ES 算法中的所有项的重新推导和报告的封闭形式表达式中,都增加了文献中可用的表面项表达式[Stenhammar、Trulsson 和 Linse(2011),J. Chem. Phys. 134,224104]和先前研究中报告的精确势能表达式[Volkov、King、Coppens 和 Farrugia(2006),Acta Cryst. A62,400-408]。该算法使用 Fortran 在 XD 软件包的 XDPROP 模块中进行编码,已在几个小分子晶体系统(甲酰胺、苯、L-多巴、扑热息痛、氨基酸等)上进行了测试,并与一系列基于 EP/MM 的直接空间求和(DS)进行了比较,这些 DS 是在沿着正、负晶体学方向生成的若干个单元胞内进行的。与 DS 计算相比,基于 EP/MM 的 ES 技术可更精确地确定 EF 和 EFG,并可显著提高评估的 ESP 精度,即使后者包括沿着每个晶体学方向生成的四个额外单元胞内的对称等效原子的贡献。在计算性能方面,ES/EP/MM 方法明显快于在扩展单元胞限制内进行的 DS 计算,但在缩减求和范围内落后于 DS 计算。然而,所描述的基于 EP/MM 的 ES 算法优于直接空间求和,因为它不需要用户不断监测作为求和限制函数的评估性质的收敛性,并提供了更好的精度-性能平衡。

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