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微阵列分析鉴定老年术后认知功能障碍小鼠中关键差异表达的环状RNA

Microarray Analysis Identifies Key Differentially Expressed Circular RNAs in Aged Mice With Postoperative Cognitive Dysfunction.

作者信息

Wu Yu-Qing, Liu Qiang, Wang Hai-Bi, Chen Chen, Huang Hui, Sun Yi-Man, Ma Lin-Hui, Wan Jie, Sun Yin-Ying, Miao Hui-Hui

机构信息

Jiangsu Province Key Laboratory of Anesthesiology, Xuzhou Medical University, Xuzhou, China.

Department of Anesthesiology, Beijing Shijitan Hospital, Capital Medical University, Beijing, China.

出版信息

Front Aging Neurosci. 2021 Aug 16;13:716383. doi: 10.3389/fnagi.2021.716383. eCollection 2021.

DOI:10.3389/fnagi.2021.716383
PMID:34483886
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8415796/
Abstract

Postoperative cognitive dysfunction (POCD) is a common complication in elderly patients. Circular RNAs (circRNAs) may contribute to neurodegenerative diseases. However, the role of circRNAs in POCD in aged mice has not yet been reported. This study aimed to explore the potential circRNAs in a POCD model. First, a circRNA microarray was used to analyze the expression profiles. Differentially expressed circRNAs were validated using quantitative real-time polymerase chain reaction. A bioinformatics analysis was then used to construct a competing endogenous RNA (ceRNA) network. The database for annotation, visualization, and integrated discovery was used to perform Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of circRNA-related genes. Moreover, protein-protein interactions were analyzed to predict the circRNA-regulated hub genes using the STRING and molecular complex detection plug-in of Cytoscape. Microarray screen 124 predicted circRNAs in the POCD of aged mice. We found that the up/downregulated circRNAs were involved in multiple signaling pathways. Hub genes, including and , were identified and may be regulated by ceRNA networks. These results suggest that circRNAs are dysexpressed in the hippocampus and may contribute to POCD in aged mice.

摘要

术后认知功能障碍(POCD)是老年患者常见的并发症。环状RNA(circRNAs)可能与神经退行性疾病有关。然而,circRNAs在老年小鼠POCD中的作用尚未见报道。本研究旨在探索POCD模型中潜在的circRNAs。首先,使用circRNA微阵列分析表达谱。通过定量实时聚合酶链反应验证差异表达的circRNAs。然后利用生物信息学分析构建竞争性内源RNA(ceRNA)网络。使用注释、可视化和综合发现数据库对circRNA相关基因进行基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析。此外,利用STRING和Cytoscape的分子复合物检测插件分析蛋白质-蛋白质相互作用,以预测circRNA调控的枢纽基因。微阵列筛选出老年小鼠POCD中124个预测的circRNAs。我们发现上调/下调的circRNAs参与多个信号通路。鉴定出包括 和 在内的枢纽基因,它们可能受ceRNA网络调控。这些结果表明,circRNAs在海马体中表达失调,可能导致老年小鼠发生POCD。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/b5d3ef7f712b/fnagi-13-716383-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/332292515f48/fnagi-13-716383-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/7dc72e477301/fnagi-13-716383-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/a7f517e772c6/fnagi-13-716383-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/477b8ed03186/fnagi-13-716383-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/9f56af923a39/fnagi-13-716383-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/b5d3ef7f712b/fnagi-13-716383-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/332292515f48/fnagi-13-716383-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/7dc72e477301/fnagi-13-716383-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/a7f517e772c6/fnagi-13-716383-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/477b8ed03186/fnagi-13-716383-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/9f56af923a39/fnagi-13-716383-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151f/8415796/b5d3ef7f712b/fnagi-13-716383-g0006.jpg

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