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转录组分析人类外周血单个核细胞刺激的 PPE57 鉴定与 I 型干扰素信号相关的特征基因。

Transcriptional Profiling of Human Peripheral Blood Mononuclear Cells Stimulated by PPE57 Identifies Characteristic Genes Associated With Type I Interferon Signaling.

机构信息

Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, China.

出版信息

Front Cell Infect Microbiol. 2021 Aug 19;11:716809. doi: 10.3389/fcimb.2021.716809. eCollection 2021.

Abstract

Proline-glutamic acid (PE)- and proline-proline-glutamic acid (PPE)-containing proteins are exclusive to (), the leading cause of tuberculosis (TB). In this study, we performed global transcriptome sequencing (RNA-Seq) on PPE57-stimulated peripheral blood mononuclear cells (PBMCs) and control samples to quantitatively measure the expression level of key transcripts of interest. A total of 1367 differentially expressed genes (DEGs) were observed in response to a 6 h exposure to PPE57, with 685 being up-regulated and 682 down-regulated. Immune-related gene functions and pathways associated with these genes were evaluated, revealing that the type I IFN signaling pathway was the most significantly enriched pathway in our RNA-seq dataset, with 14 DEGs identified therein including , and . These PPE57-related transcriptomic profiles have implications for a better understanding of host global immune mechanisms underlying infection outcomes. However, more studies regarding these DEGs and type I IFN signaling in this infectious context are necessary to more fully clarify the underlying mechanisms that arise in response to PPE57 during infection.

摘要

脯氨酸-谷氨酸(PE)-和脯氨酸-脯氨酸-谷氨酸(PPE)-富含蛋白是结核分枝杆菌()所特有的,是导致结核病(TB)的主要原因。在这项研究中,我们对 PPE57 刺激的外周血单核细胞(PBMC)和对照样本进行了全局转录组测序(RNA-Seq),以定量测量感兴趣的关键转录物的表达水平。在 6 小时暴露于 PPE57 后,观察到 1367 个差异表达基因(DEG),其中 685 个上调,682 个下调。评估了与这些基因相关的免疫相关基因功能和途径,结果表明,I 型 IFN 信号通路是我们 RNA-seq 数据集中最显著富集的途径,其中鉴定出 14 个 DEG,包括 、和 。这些与 PPE57 相关的转录组谱有助于更好地理解宿主感染结局的全球免疫机制。然而,为了更全面地阐明在感染过程中针对 PPE57 产生的潜在机制,有必要对这些 DEG 和 I 型 IFN 信号在这种感染环境中的作用进行更多研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15ef/8416891/20ef33103236/fcimb-11-716809-g001.jpg

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