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鉴定细胞周期蛋白依赖性激酶20(CDC20)作为肾母细胞瘤诊断和治疗的新型生物标志物。

Identification of CDC20 as a Novel Biomarker in Diagnosis and Treatment of Wilms Tumor.

作者信息

Shi Qinlin, Tang Bo, Li Yanping, Li Yonglin, Lin Tao, He Dawei, Wei Guanghui

机构信息

Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Chongqing Key Laboratory of Children Urogenital Development and Tissue Engineering, China International Science and Technology Cooperation Base of Child Development and Critical Disorders, Pediatric Research Institute, Children's Hospital of Chongqing Medical University, Chongqing, China.

Department of Pediatric Urology Surgery, Children's Hospital of Chongqing Medical University, Chongqing, China.

出版信息

Front Pediatr. 2021 Aug 26;9:663054. doi: 10.3389/fped.2021.663054. eCollection 2021.

Abstract

Wilms tumor (WT) is a common malignant solid tumor in children. Many tumor biomarkers have been reported; however, there are poorly targetable molecular mechanisms which have been defined in WT. This study aimed to identify the oncogene in WT and explore the potential mechanisms. Differentially expressed genes (DEGs) in three independent RNA-seq datasets were downloaded from The Cancer Genome Atlas data portal and the Gene Expression Omnibus database (GSE66405 and GSE73209). The common DEGs were then subjected to Gene Ontology enrichment analysis, protein-protein interaction (PPI) network analysis, and gene set enrichment analysis. The protein expression levels of the hub gene were analyzed by immunohistochemical analysis and Western blotting in a 60 WT sample. The univariate Kaplan-Meier analysis for overall survival was performed, and the log-rank test was utilized. A small interfering RNA targeting cell division cycle 20 (CDC20) was transfected into G401 and SK-NEP-1 cell lines. The Cell Counting Kit-8 assay and wound healing assay were used to observe the changes in cell proliferation and migration after transfection. Flow cytometry was used to detect the effect on the cell cycle. Western blot was conducted to study the changes of related functional proteins. We commonly identified 44 upregulation and 272 downregulation differentially expressed genes in three independent RNA-seq datasets. Gene and pathway enrichment analyses of the regulatory networks involving hub genes suggested that cell cycle changes are crucial in WT. The top 15 highly connected genes were found by PPI network analysis. Furthermore, we demonstrated that one candidate biomarker, CDC20, for the diagnosis of WT was detected, and its high expression predicted poor prognosis of WT patients. Moreover, the area under the curve value obtained by receiver operating characteristic curve analysis from paired WT samples was 0.9181. Finally, we found that the suppression of CDC20 inhibited proliferation and migration and resulted in G2/M phase arrest in WT cells. The mechanism may be involved in increasing the protein level of securin, cyclin B1, and cyclin A Our results suggest that CDC20 could serve as a candidate diagnostic and prognostic biomarker for WT, and suppression of CDC20 may be a potential approach for the prevention and treatment of WT.

摘要

肾母细胞瘤(WT)是儿童常见的恶性实体瘤。已有许多肿瘤生物标志物被报道;然而,WT中仍存在难以靶向的分子机制。本研究旨在鉴定WT中的致癌基因并探索其潜在机制。从癌症基因组图谱数据门户和基因表达综合数据库(GSE66405和GSE73209)下载了三个独立RNA测序数据集的差异表达基因(DEG)。然后对共同的DEG进行基因本体富集分析、蛋白质-蛋白质相互作用(PPI)网络分析和基因集富集分析。通过免疫组织化学分析和蛋白质印迹法在60个WT样本中分析了枢纽基因的蛋白质表达水平。进行了总体生存的单变量Kaplan-Meier分析,并采用对数秩检验。将靶向细胞分裂周期20(CDC20)的小干扰RNA转染到G401和SK-NEP-1细胞系中。使用细胞计数试剂盒-8检测法和伤口愈合检测法观察转染后细胞增殖和迁移的变化。采用流式细胞术检测对细胞周期的影响。进行蛋白质印迹法研究相关功能蛋白的变化。我们在三个独立的RNA测序数据集中共同鉴定出44个上调和272个下调的差异表达基因。对涉及枢纽基因的调控网络进行基因和通路富集分析表明,细胞周期变化在WT中至关重要。通过PPI网络分析发现了前15个高度连接的基因。此外,我们证明检测到一种用于WT诊断的候选生物标志物CDC-20,其高表达预示着WT患者预后不良。此外,通过对配对WT样本进行受试者工作特征曲线分析获得曲线下面积值为0.9181。最后,我们发现抑制CDC20可抑制WT细胞的增殖和迁移并导致G2/M期阻滞。其机制可能与增加分离酶、细胞周期蛋白B1和细胞周期蛋白A的蛋白质水平有关。我们的结果表明,CDC20可作为WT的候选诊断和预后生物标志物,抑制CDC20可能是WT预防和治疗的潜在方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cf8/8428148/30a0c79189f9/fped-09-663054-g0001.jpg

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