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利用新型深度特征融合算法和有效的高维特征选择方法对生物图像进行自动检测。

Automated detection of bioimages using novel deep feature fusion algorithm and effective high-dimensional feature selection approach.

机构信息

Centre for Advanced Studies, Dr A.P.J. Abdul Kalam Technical University, Lucknow, India.

Dr A.P.J. Abdul Kalam Technical University, Lucknow, India.

出版信息

Comput Biol Med. 2021 Oct;137:104862. doi: 10.1016/j.compbiomed.2021.104862. Epub 2021 Sep 10.

DOI:10.1016/j.compbiomed.2021.104862
PMID:34534793
Abstract

The classification of bioimages plays an important role in several biological studies, such as subcellular localisation, phenotype identification and other types of histopathological examinations. The objective of the present study was to develop a computer-aided bioimage classification method for the classification of bioimages across nine diverse benchmark datasets. A novel algorithm was developed, which systematically fused the features extracted from nine different convolution neural network architectures. A systematic fusion of features boosts the performance of a classifier but at the cost of the high dimensionality of the fused feature set. Therefore, non-discriminatory and redundant features need to be removed from a high-dimensional fused feature set to improve the classification performance and reduce the time complexity. To achieve this aim, a method based on analysis of variance and evolutionary feature selection was developed to select an optimal set of discriminatory features from the fused feature set. The proposed method was evaluated on nine different benchmark datasets. The experimental results showed that the proposed method achieved superior performance, with a significant reduction in the dimensionality of the fused feature set for most bioimage datasets. The performance of the proposed feature selection method was better than that of some of the most recent and classical methods used for feature selection. Thus, the proposed method was desirable because of its superior performance and high compression ratio, which significantly reduced the computational complexity.

摘要

生物图像的分类在许多生物学研究中起着重要作用,例如亚细胞定位、表型鉴定和其他类型的组织病理学检查。本研究的目的是开发一种计算机辅助生物图像分类方法,用于对九个不同基准数据集的生物图像进行分类。开发了一种新算法,该算法系统地融合了从九个不同卷积神经网络架构中提取的特征。特征的系统融合可以提高分类器的性能,但代价是融合特征集的高维度。因此,需要从高维融合特征集中去除非判别性和冗余特征,以提高分类性能并降低时间复杂度。为了实现这一目标,开发了一种基于方差分析和进化特征选择的方法,从融合特征集中选择最佳的判别特征集。该方法在九个不同的基准数据集上进行了评估。实验结果表明,该方法在大多数生物图像数据集上都取得了优异的性能,并且融合特征集的维度显著降低。与一些最近和经典的特征选择方法相比,所提出的特征选择方法的性能更好。因此,由于其优异的性能和高压缩比,该方法具有很高的吸引力,大大降低了计算复杂度。

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