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灵长类动物环状 RNA 的进化动态。

Evolutionary dynamics of circular RNAs in primates.

机构信息

EMBL Australia, Garvan Institute of Medical Research, Darlinghurst, Australia.

St. Vincent Clinical School, University of New South Wales, Darlinghurst, Australia.

出版信息

Elife. 2021 Sep 20;10:e69148. doi: 10.7554/eLife.69148.

Abstract

Many primate genes produce circular RNAs (circRNAs). However, the extent of circRNA conservation between closely related species remains unclear. By comparing tissue-specific transcriptomes across over 70 million years of primate evolution, we identify that within 3 million years circRNA expression profiles diverged such that they are more related to species identity than organ type. However, our analysis also revealed a subset of circRNAs with conserved neural expression across tens of millions of years of evolution. By comparing to species-specific circRNAs, we identified that the downstream intron of the conserved circRNAs display a dramatic lengthening during evolution due to the insertion of novel retrotransposons. Our work provides comparative analyses of the mechanisms promoting circRNAs to generate increased transcriptomic complexity in primates.

摘要

许多灵长类动物基因产生环状 RNA(circRNA)。然而,在密切相关的物种之间,circRNA 的保守程度尚不清楚。通过比较 7000 多万年灵长类进化过程中的组织特异性转录组,我们发现,在 300 万年的时间里,circRNA 的表达谱发生了分歧,使得它们与物种身份的关系比与器官类型的关系更为密切。然而,我们的分析还揭示了一组具有保守神经表达的circRNA,它们在数千万年的进化过程中保持不变。通过与物种特异性的 circRNA 进行比较,我们发现,由于插入新的逆转录转座子,保守 circRNA 的下游内含子在进化过程中显著延长。我们的工作提供了对促进 circRNA 产生更多转录组复杂性的机制的比较分析,这在灵长类动物中很常见。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2175/8516421/068067e34966/elife-69148-fig1.jpg

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