Williams Paul T
Lawrence Berkeley National Laboratory, Molecular Biophysics & Integrated Bioimaging Division, 1 Cyclotron Road, Berkeley, CA 94720, USA.
Int J Genomics. 2021 Sep 2;2021:3889278. doi: 10.1155/2021/3889278. eCollection 2021.
"Quantile-dependent expressivity" occurs when the effect size of a genetic variant depends upon whether the phenotype (e.g., serum uric acid) is high or low relative to its distribution. Analyses were performed to test whether serum uric acid heritability is quantile-specific and whether this could explain some reported gene-environment interactions.
Serum uric acid concentrations were analyzed from 2151 sibships and 12,068 offspring-parent pairs from the Framingham Heart Study. Quantile-specific heritability from offspring-parent regression slopes ( , = 2 /(1 + )) and full-sib regression slopes ( , = {(1 + 8 ) - 1}/(2 )) was robustly estimated by quantile regression with nonparametric significance assigned from 1000 bootstrap samples.
Quantile-specific (±SE) increased with increasing percentiles of the offspring's sex- and age-adjusted uric acid distribution when estimated from ( = 0.001): 0.34 ± 0.03 at the 10, 0.36 ± 0.03 at the 25, 0.41 ± 0.03 at the 50, 0.46 ± 0.04 at the 75, and 0.49 ± 0.05 at the 90 percentile and when estimated from ( = 0.006). This is consistent with the larger genetic effect size of (1) the rs11722228 polymorphism in gout patients vs. controls, (2) the rs2231142 polymorphism in men vs. women, (3) the rs13113918 polymorphism in obese patients prior to bariatric surgery vs. two-year postsurgery following 29 kg weight loss, (4) the rs6855911 polymorphism in obese vs. nonobese women, and (5) the rs2544390 polymorphism in heavier drinkers vs. abstainers. Quantile-dependent expressivity may also explain the larger genetic effect size of an // haplotype for high vs. low intakes of alcohol, chicken, or processed meats.
Heritability of serum uric acid concentrations is quantile-specific.
当基因变异的效应大小取决于表型(如血清尿酸)相对于其分布是高还是低时,就会出现“分位数依赖表达性”。进行分析以检验血清尿酸遗传力是否具有分位数特异性,以及这是否可以解释一些已报道的基因-环境相互作用。
对弗雷明汉心脏研究中的2151个同胞对和12068个亲子对的血清尿酸浓度进行了分析。通过分位数回归稳健地估计了来自亲子回归斜率(,= 2 /(1 + ))和全同胞回归斜率(,= {(1 + 8 ) - 1}/(2 ))的分位数特异性遗传力,并从1000个自抽样样本中分配非参数显著性。
当从估计时( = 0.001),随着后代性别和年龄调整后的尿酸分布百分位数的增加,分位数特异性(±SE)增加:在第10百分位数为0.34 ± 0.03,第25百分位数为0.36 ± 0.03,第50百分位数为0.41 ± 0.03,第75百分位数为0.46 ± 0.04,第90百分位数为0.49 ± 0.05;当从估计时( = 0.006)。这与以下情况的较大遗传效应大小一致:(1)痛风患者与对照中rs11722228多态性,(2)男性与女性中rs2231142多态性,(3)肥胖患者在减肥手术前与术后两年体重减轻29 kg后的rs13113918多态性,(4)肥胖与非肥胖女性中rs6855911多态性,以及(5)重度饮酒者与戒酒者中rs2544390多态性。分位数依赖表达性也可能解释了酒精摄入量、鸡肉或加工肉类摄入量高与低的//单倍型的较大遗传效应大小。
血清尿酸浓度的遗传力具有分位数特异性。